Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1245 ATGGCAGTCAATGTTGTTCGTATAGCTGCTGTAACTCCATTACCCACTCCAAGGTCTTTCCACAATAAGATTCAAAGAAACAGAATTTCTGTGGGTTACTCTCAGAGCATCAGAAAATTCCCTTCGTCACTCAGGAAAGGCACATCTTTTGTGTTGGCTTGTCTACCTCCTCCTGCTTCTCAATCTCCAACCCCATCATCACATACCAAACCCACTTCTGCTCCTCCAACCAAGCTCTACGTCAGTGGGCTATCTTTTCGTACCACTGAAGAGAGCTTGCGAAATGCCTTTCAGAATTTTGGTGAACTTGTGGAAGTGAACCTGGTGATGGATAAAATAGCAAACAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACCGAAGAGGAATCCCATAAGGCTATTGAAGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCAAAACCAAGGTCAGAGTTGCGCCAAAGGCTAAACCAAAACCCGAGATAG 507 0.4438 MAVNVVRIAAVTPLPTPRSFHNKIQRNRISVGYSQSIRKFPSSLRKGTSFVLACLPPPASQSPTPSSHTKPTSAPPTKLYVSGLSFRTTEESLRNAFQNFGELVEVNLVMDKIANRPRGFAFLRYATEEESHKAIEGMHGKFLDGRVIFVEVAKPRSELRQRLNQNPR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1245 168 Gene3D - 59 168 IPR012677 -
Dere01g1245 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Dere01g1245 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Dere01g1245 168 SMART rrm1_1 78 151 IPR000504 GO:0003723
Dere01g1245 168 MobiDBLite consensus disorder prediction 55 76 - -
Dere01g1245 168 SUPERFAMILY RNA-binding domain, RBD 58 165 IPR035979 GO:0003676
Dere01g1245 168 PANTHER NUCLEOLAR PROTEIN 8 53 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1245 Dere-ChrDere01 24866477 24868969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1245 77 166 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 9.03e-11 57.8