Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1243 ATGCCAGAATCTAGGTACAAGAAGAGGAAGGAGGAGGCAGGCAAAGATATGGCAAGGGTCGGGTTACCGCCGGGTTTTCGGTTCCATCCGACCGATGAAGAGCTTGTCAACTATTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGACATCATTCCTGAGGTTGATCTCTACAAATGTGAACCATGGGAACTTGCAGAGAAGTCATTTCTGCCAAGTAGAGACCCAGAGTGGTACTTCTTTGGACCCAGGGATAGGAAATACCCCAATGGCTTCAGAACAAACAGAGCCACTCGAGCTGGGTACTGGAAGTCCACTGGGAAAGACAGGAGAGTCACTTCCCAGAACAGACCCATTGGCATGAAGAAAACCCTTGTTTACTACAGAGGCAGAGCCCCTCAAGGCATCAGAACTGACTGGGTTATGCATGAGTATCGCCTCGATGACAAAGAATGCGAGGACACCTCTGGCATACAGGATACTTATGCATTGTGCCGAGTGTTCAAGAAAAACGGAATCTGTTCTGAAATTGAAGAGCAAGGGCAGTGTAGTTTAACACTAATGGAGAGCTCACAAACCATAAATATGAATGAAAGTGAAACCATGTCTCCAGACGTAGCTGGGGCATCTTCTTCGTGCTTGGAGGAGGAAGACAAAGATGATTCATGGATGCAGTTTATTACAGACGATGCATGGTGTCCTTCTAATGCAGCCATGGCAGGTTGTGAAGAACTCTCTCATTTTACATTCACAAACTAA 765 0.4601 MPESRYKKRKEEAGKDMARVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTSQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTSGIQDTYALCRVFKKNGICSEIEEQGQCSLTLMESSQTINMNESETMSPDVAGASSSCLEEEDKDDSWMQFITDDAWCPSNAAMAGCEELSHFTFTN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1243 254 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Dere01g1243 254 FunFam Nac domain-containing protein 86 31 175 - -
Dere01g1243 254 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Dere01g1243 254 SUPERFAMILY NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Dere01g1243 254 Gene3D NAC domain 31 175 IPR036093 GO:0003677|GO:0006355
Dere01g1243 254 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1243 Dere-ChrDere01 24855017 24858553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1243 17 243 NAC Transcription Factor Family AT3G17730 78.008 7.33e-135 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere01g1243 NAM 5.4e-40 No_clan