Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1236 ATGAGTGGGCCCCACCAACAAAGCATGCCTCAGCAAATCCACGTCGTCATCCACGTGGAACTGCAGGCCACTCAAAACCCTCCAAACGACAACGTCATCGTCCACGTGAAGAAGTGGCTTTTGCAGTTCATCATGGTGAGAAAGAAGAGAACTGAGGTTCCCAGTGGAGGCGAAAGCTCTGGCGCTCATGAGAGTGGGGGAAGTGGTAGAGGTTCTCAACGCCCTCCTGAAAGGAGTGCTCAAGCCCAACCACAGTCTGGAGGAGGAGGAGGAGGATCCCAAGGAGGTAGAGGTTGGATTCCCCAAGGAGGACGTGGGGGCTATGGAGGGCGTGGCCGTGGTTTACCCCCACAGCAACATGGTGGCCACCCAGACTATCAAGGTAGGGGAAGGGGAGGACCTTTCCAGCAGGGAGGTCGTGGTGGATATGGTGGTGGCCGTGGTGGGGATGCAAGCAGTGGCCGTGGTGGTGGGCCTTCATATGGTGTCCCATCCCGACCTGATGTACCCGAGCTGCACCAAGCTACCCCAGTTTCATATCAAGCTGGGGTGACTCCTCAGTCTGGAGTATCTGAGGCCAGTTCTTCTTCCCAAATGCCTGAGACATCCCAATTGGAACGGCAAACTATGCAGACAGCTGTTCATTCAGAAGCTGCTCCTGTCCTCCCAGCCTCAAGTAAATTACTGAGGTTTCCCCATCGGCCTGGAAAGGGTAGCTATGGCATGAAATGTATTGTCAAAGCTAACCATTTCTTTGCAGAGTTACCTAACAAAGATCTTCACCAGTATGATGTAACTATAACGCCAGAAGTGGCTTCAAGAGGTGTAAACCGTGCTGTTATGGATCAGCTGGTTAGGCTATACCGTGAGTCTCGTCTAGGGATGAGACTTCCTGCATATGATGGTCGTAAAAGTCTATATACTGCTGGTCCACTTCCTTTTGTTTCGAGTGAGTTCAAAATCACTCTCATTGATGAAGATGATGGATCAGGAGCAGGAGTTCAAAGGAGGGTGAGGGATTTTACAGTGGTGATAAAATTCGCTGCAAGAGCTGACCTTCACCACTTAGGACTCTTTTTGCAAGGGAGGCAAGCAGATGCGCCTCAGGAAGCCCTTCAGGTTCTTGACATTGTTCTGCGTGAACTACCCACAACTAGGTATTGTCCTGTTGGAAGGTCTTTCTATTCACCTAATTTAGGTCGGAGGCAACCGTTAGGTGAGGGTTTGGAGAGTTGGCGTGGGTTCTACCAAAGTATTCGTCCAACTCAGATGGGATTATCACTCAACATTGATATGTCATCAACCGCATTTATTGAACCACTGCCAGTAATTGATTTTGTTACTCAGCTGCTGAACAGGGATGTCACCACCCGACCATTGTCTGATGCTGATCGTGTAAAGATCAAAAAAGCACTTCGTGGTGTCAAAGTTGAAGTAACACACCGTGGAAACATGAGAAGGAAATATCGCATCTCTGGTCTGACATCACAGGCAACTAGAGAGCTGACATTCCCTGTTGATGAGAGGGGGACAGTGAAATCTGTTGTGGAGTATTTTTATGAGACATATGGATTTGTCATTCAACATACTCAATGGCCTTGTTTACAAGTGGGCAATACAAATAGACCAAACTATTTGCCAATGGAGGTTTGCAAGATTGTAGAAGGTCAAAGGTACTCAAAGAGGTTGAATGAGAGGCAGATTACTGCTTTGCTTAAAGTCACCTGTCAGCGTCCTGTTGAGAGGGAGCGAGATATCATGCAGACGGTTCATCATAATGCTTACCATGAAGATCCTTATGCTGAAGAGTTTGGAATCAAAATCAGTGAGAAACTTGCTCAAGTTGAAGCTCGCATACTTCCTGCACCCCGGCTGAAGTATCATGATACTGGTAGAGAAAAGGATTGTCTACCTCAAGTTGGCCAATGGAATATGATGAACAAGAAAATGGTCAATGGGGGAACTGTTAACAACTGGATCTGCATAAATTTTTCAAGGAATGTTCAAGAAAGTGTTGCCCGGGGCTTTTGTTATGAACTTGCCCAGATGTGTTATATATCTGGCATGGCATTTAATCCAGAGCCGGTACTTTCTGCCTACAGTGCTCGCCCTGACCAGGTGGATAAGGTTCTAAAAGCTCGCCATCATGATGCTAAGAACAAACTGCAGGGAAAGGAGCTTGATCTACTTATTGTTATTTTGCCTGATAATAATGGCTCTCTTTATGGTGATCTGAAACGGATATGTGAGACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACAAAGCATGTCTTTAAAATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATCAATGTGAAGGTTGGTGGAAGGAACACAGTGCTTGTTGATGCACTCTCACGATGCATACCATTAGTTAGTGACCGGCCCACAATTATATTTGGAGCTGATGTAACTCATCCACACCCTGGAGAGGATTCTAGTCCATCTATAGCAGCTGTTGTGGCTTCTCAAGATTGGCCTGAAATTACCAAGTATTCTGGATTGGTTTGTGCTCAAGCACATCGGCAGGAGCTCATTCAAGACCTTTTTAAACAATGGCAAGATCCAGCAAGAGGGACAGTAACTGGTGGAATGATCAAGGAGCTTCTCATATCTTTCCGGAAAGCCACAGGGCAGAAGCCACAACGCATCATATTTTACAGGGATGGTGTGAGCGAGGGACAGTTCTATCAAGTTTTACTTTTTGAGCTTGATGCTATCCGCAAGGCATGTGCATCCCTAGAACCTAATTATCAGCCTCCTGTCACTTTTGTGGTGGTTCAAAAACGCCATCACACGAGGTTGTTTGCTAACAACCATCATGATAGAAATTCCATTGACCGGAGCGGGAATATATTGCCTGGTACGGTTGTAGACTCCAAAATCTGTCATCCAACTGAGTTTGACTTCTATCTTTGTAGTCATGCTGGGATACAGGGCACAAGCCGTCCAGCTCATTACCATGTGTTATGGGATGAAAACAATTTTACTGCTGATGCACTGCAAACGCTGACTAACAACCTCTGTTATACCTATGCAAGATGCACACGATCTGTCTCAATTGTGCCCCCTGCATACTATGCACATTTGGCTGCTTTTCGAGCTCGATTTTACATGGAACCTGCTACATCCGATAGTGAGTCTATGACAAGTGCTGCTGCCGGACGTGGAGCAGGTATTGGTCCGGGACGTGGCACTCGTGCACCTGGTGCTTCTGCTGCTGTCAGGCCTCTTCCTGCCCTTAAGGAGAATGTTAAGAAGGTCATGTTTTACTGTTAA 3309 0.4675 MSGPHQQSMPQQIHVVIHVELQATQNPPNDNVIVHVKKWLLQFIMVRKKRTEVPSGGESSGAHESGGSGRGSQRPPERSAQAQPQSGGGGGGSQGGRGWIPQGGRGGYGGRGRGLPPQQHGGHPDYQGRGRGGPFQQGGRGGYGGGRGGDASSGRGGGPSYGVPSRPDVPELHQATPVSYQAGVTPQSGVSEASSSSQMPETSQLERQTMQTAVHSEAAPVLPASSKLLRFPHRPGKGSYGMKCIVKANHFFAELPNKDLHQYDVTITPEVASRGVNRAVMDQLVRLYRESRLGMRLPAYDGRKSLYTAGPLPFVSSEFKITLIDEDDGSGAGVQRRVRDFTVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPNLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVTTRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTVKSVVEYFYETYGFVIQHTQWPCLQVGNTNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAEEFGIKISEKLAQVEARILPAPRLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQESVARGFCYELAQMCYISGMAFNPEPVLSAYSARPDQVDKVLKARHHDAKNKLQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRCIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYSGLVCAQAHRQELIQDLFKQWQDPARGTVTGGMIKELLISFRKATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNSIDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPATSDSESMTSAAAGRGAGIGPGRGTRAPGASAAVRPLPALKENVKKVMFYC 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1236 1102 Gene3D paz domain 434 559 - -
Dere01g1236 1102 Pfam N-terminal domain of argonaute 243 379 IPR032474 -
Dere01g1236 1102 SUPERFAMILY Ribonuclease H-like 718 1051 IPR012337 -
Dere01g1236 1102 Pfam Mid domain of argonaute 638 712 IPR032473 -
Dere01g1236 1102 Gene3D - 798 1102 IPR036397 GO:0003676
Dere01g1236 1102 FunFam protein argonaute 10-like 798 1102 - -
Dere01g1236 1102 Pfam Glycine-rich region of argonaut 121 220 IPR024357 -
Dere01g1236 1102 MobiDBLite consensus disorder prediction 1059 1081 - -
Dere01g1236 1102 SMART Piwi_a_2 729 1050 IPR003165 GO:0003676
Dere01g1236 1102 MobiDBLite consensus disorder prediction 61 90 - -
Dere01g1236 1102 ProSiteProfiles PAZ domain profile. 441 555 IPR003100 GO:0005515
Dere01g1236 1102 SMART DUF1785_2 388 440 IPR014811 -
Dere01g1236 1102 Pfam PAZ domain 445 570 IPR003100 GO:0005515
Dere01g1236 1102 ProSiteProfiles Piwi domain profile. 729 1050 IPR003165 GO:0003676
Dere01g1236 1102 MobiDBLite consensus disorder prediction 183 214 - -
Dere01g1236 1102 CDD Piwi_ago-like 599 1049 IPR045246 -
Dere01g1236 1102 Pfam Argonaute linker 2 domain 581 627 IPR032472 -
Dere01g1236 1102 SMART PAZ_2_a_3 445 577 IPR003100 GO:0005515
Dere01g1236 1102 MobiDBLite consensus disorder prediction 51 171 - -
Dere01g1236 1102 CDD PAZ_argonaute_like 440 554 - -
Dere01g1236 1102 Gene3D - 619 792 - -
Dere01g1236 1102 Pfam Piwi domain 730 1049 IPR003165 GO:0003676
Dere01g1236 1102 SUPERFAMILY PAZ domain 245 592 IPR036085 GO:0005515
Dere01g1236 1102 FunFam Protein argonaute-2 434 560 - -
Dere01g1236 1102 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 223 1051 - -
Dere01g1236 1102 FunFam Argonaute 10 619 792 - -
Dere01g1236 1102 Pfam Argonaute linker 1 domain 389 439 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1236 Dere-ChrDere01 24758361 24765799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1236 125 1102 Eukaryotic Initiation Factors Gene Family AT1G48410 80.305 0.0 1585