Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1229 ATGGAATCAAAGGCACACGACGCTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCCTCTCACCCTTGCCTTCCTTTGTCTCACTCATCGGTTAGGGTCCTCTAATTGTTCGAAAATGGCTGATGGTCATGAGACTGATAAGAACATTGAGGTATGGAAAATCAAGAAATTGATCAAAGCTCTTGAGGCTGCTAGAGGAAATGGGACGAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATATCTCGTGTTACCAAGATGCTTGGTGACGAGTTTGGAACTGCTTCAAACATAAAAAGCAGGGTGAATAGGCAGTCTGTGCTCGGTGCAATCACTTCTGCTCAGCAAAGGCTTAAGCTATATAACAAGGTTCCTCCAAACGGACTTGTTCTATATACTGGGACAATTGTAACTGATGACGGGAAGGAAAAGAAGGTGACTATTGATTTTGAGCCCTTCAGGCCTATCAATGCATCTCTCTACCTTTGCGACAACAAGTTTCATACAGAAGCTCTAAATGAACTGCTAGAGTCTGATGACAAGTTTGGTTTCATTGTTATGGATGGCAATGGTACACTTTTTGGGACCCTGAGTGGCAATACAAGAGAGGTGCTTCATAAATTTAGTGTGGATCTCCCAAAGAAACATGGAAGAGGGGGGCAATCAGCTCTACGGTTTGCTCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCAGAGCTTGCAACACAATTCTATATAAATCCTGCTACTAGTCAGCCTAATGTATCCGGTTTAATTCTGGCTGGTTCGGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTAGATGTATCTTATGGTGGGGAGAATGGATTCAATCAGGCGATTGAACTATCTGCCGAGATTCTGTCCAACGTGAAGTTTATCCAGGAGAAGCGCTTAATTGGAAAATATTTTGAGGAGATTAGCCAGGATACTGGAAAGTACGTTTTTGGGGTTGATGATACTCTAAAAGCTCTGGAGATGGGTGCTGTTGAGACACTTATTGTCTGGGAAAATCTTGATATGAATAGGTTTGTCTTAAAACATAGCGTTACTGGTGAGCTTGTTATTAAGCACTTTAACAAGGAGCAGGAGGCCAACCAGAACAATTTTCGGGATTCTGCTGGCTCTGGTGAATATGAGGTTCAGGAAAATATGTCTCTGCTGGAATGGTTGGCAAATGAGTACAAACGGTTTGGTTGCACGCTTGAGTTTGTCACCAATAAATCGCAAGAAGGTTCACAGTTTTGCAGGGGTTTTGGTGGAATAGGGGGAATCCTGCGTTACCAGCTTGATATGAGATCATTTGATGATTTCTCTGATGATGGAGAAGTATATGATGATGATGAATAG 1434 0.4275 MESKAHDAPSSLSLSLSLSHPLTLAFLCLTHRLGSSNCSKMADGHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDMNRFVLKHSVTGELVIKHFNKEQEANQNNFRDSAGSGEYEVQENMSLLEWLANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDDFSDDGEVYDDDE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1229 477 SMART eRF1_1_2 44 180 IPR005140 -
Dere01g1229 477 SUPERFAMILY L30e-like 318 460 IPR029064 -
Dere01g1229 477 Gene3D eRF1 domain 2 176 317 IPR042226 -
Dere01g1229 477 FunFam Eukaryotic peptide chain release factor subunit 1 42 175 - -
Dere01g1229 477 Gene3D - 319 477 IPR029064 -
Dere01g1229 477 FunFam Eukaryotic peptide chain release factor subunit 1 176 317 - -
Dere01g1229 477 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 46 180 IPR024049 -
Dere01g1229 477 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 45 469 IPR004403 GO:0003747|GO:0006415
Dere01g1229 477 Pfam eRF1 domain 1 58 178 IPR005140 -
Dere01g1229 477 Pfam eRF1 domain 2 184 317 IPR005141 -
Dere01g1229 477 NCBIfam peptide chain release factor aRF-1 53 457 IPR004403 GO:0003747|GO:0006415
Dere01g1229 477 SUPERFAMILY Translational machinery components 182 316 - -
Dere01g1229 477 FunFam Peptide chain release factor subunit 1 319 477 - -
Dere01g1229 477 Pfam eRF1 domain 3 321 458 IPR005142 -
Dere01g1229 477 Gene3D eRF1 domain 1 37 175 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1229 Dere-ChrDere01 24686864 24689632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1229 41 477 Eukaryotic Initiation Factors Gene Family AT3G26618 89.016 0.0 811