Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1224 ATGAACCAGAAAGCCTCCGTCTCTAAAGAACTCAATGACAAGTTCACCAAGATCTTGGAGGGCCTTCTTAAGCTGCCTGAAAACAGACAATGTGCTGACTGCCGAAGCAAGGCACCACGATGGGCAAGTGTGAACCTAGGAATCTTCATATGTATGCAATGTTCAGGAATTCACCGAAGTCTTGGGGTGCATATATCAAAGGTGCGGTCGACAACTTTGGATACATGGTTGCCAGATCAAGTATCTTTCATGCAATTCATGGGTAATGAGAAGTCAAATGAATATTGGGAGGCAGAACTGCCAACAAATTTTGACAGAATTGGCTTTGGACTGGAGAAGTTTATTCGTACCAAGTATGTGGAGAAAAGATGGGCTAAGAAAGATGGAGTGAATCCAGCTTCAAAGGCGGGTGAAATAATCTGTAACTTGAATGTGCCACCGGCTGGGGTGGCCAAGAATGGCTTTTCAAGGATCAATAGGCGACTTTCTCTTGAGGAGAGCATTCTTACAAGCCATATGGCACAGATCCTGCCTCCAGCAACAAGAACTCGTGCGGGTTCTTTTGACATTCCAAAGAGTTCCACACCTCCAGTAAGGAGACAATACCCATCATATGATTTTGACAAGTCCCCAGTAAACAATGGCACTGCTGACTTTTTGGGCATGATTGGCATCCATGGTGATAAAAAGGACTCCGTAACTGTACCTCCTACTAGCTGGACAACATTTGATTGTAAGACAACGATACTTCTATCATGCATCATCTTTTATGATCTTTCATTTATTTTCTTTTTTGCTCATTGGAAAGAGAGATGTGTCAATACTGTAAGTTTAGTGACTGCTCAGCTAGCCCTTGGTGTAGATGTCGCCATATCATTGTTGCGGAGGATGTTGTGTGAATAA 903 0.4319 MNQKASVSKELNDKFTKILEGLLKLPENRQCADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNEKSNEYWEAELPTNFDRIGFGLEKFIRTKYVEKRWAKKDGVNPASKAGEIICNLNVPPAGVAKNGFSRINRRLSLEESILTSHMAQILPPATRTRAGSFDIPKSSTPPVRRQYPSYDFDKSPVNNGTADFLGMIGIHGDKKDSVTVPPTSWTTFDCKTTILLSCIIFYDLSFIFFFAHWKERCVNTVSLVTAQLALGVDVAISLLRRMLCE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1224 300 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Dere01g1224 300 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Dere01g1224 300 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 196 IPR044520 GO:0005096
Dere01g1224 300 CDD ArfGap 19 119 - -
Dere01g1224 300 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Dere01g1224 300 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Dere01g1224 300 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Dere01g1224 300 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Dere01g1224 300 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Dere01g1224 300 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Dere01g1224 300 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1224 Dere-ChrDere01 24653004 24658472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1224 22 133 C2H2 Transcription Factor Family AT4G05330 41.593 1.28e-26 105