Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1204 ATGTTTAATAACTTACTAAGGAGGAGTTGGGCCTTTTTTGGACAAAAAACAGTTTTTTCTGTACTGTGTTGCTTTTGGAGAATAGATCAGAAAACAATGGAAGAAAGTGGGCAAAACGCCTTGAATTTTAAGTGTGCGAAGATTCTTCATGGAGTCGATAAATCTATCACTTGTCAGACTCCAGAGAAGACTAGTGAGCCCTTATCTACCAAATCGAAGGAGGGATCAGTCCCGCTTCAAAGAACATACAAGGCTATAGCTGATCTATTTGACCACATGGGTTGTTCACTGAGGTTACTTCGTCTGCGTAAAAAATCTCCAACTTTTCAAAACATTTGCTCCCAGGTTGAAGTTCTTTCGAAAAGAAAATTCTCATACATGCATCTTGCGCAAATAAAGTATATACTTCCTGAAGCCATACAAATAGACAAGGTACTAGTACATGACAAAAGAAATTTGTGTATGAAGCCTGATCTGAAGATCGCATTGACATATGAGGTCGTGCAAGGACACTCTAGTGAATCTCCATATATGGCTCTTTGGCAACTTTTTAATTCAAGGCTAATTGACTTCTTCAACACGCATCCTGAGGGTACTGATATTCCAGAAGCTACACTGCCGGAACCTTTTCAACAAAAAACTCATAGCTTGACTTGTGAGGATTTGCCTGTAGATTCTTCAACAATAGTCTTATCATCAACTTCCAATCAAAATCAACAGTTATTACAGGAATGTCATCCATATCCTATTAAAAGGCATTTCTCAAAGAAGATTGTTGTGGCAGAGACAGAAAAGATCCAGCGTTCTTCAGCAAATCAAACTGCTCTGTCATGTGATTCATCTAATTGCCTGGATAACAAAAGAAGTGAAAGTGATAGTAAATGGCAGAAGAAATATACGCCTTCATGTTTAAAATCTGATATTATGCCTAATCAGGATATGGAAAGAGGGCAGCAAAAGGAATCATCTTCTATCTGTTCCCAACCTAGTGTTGTTAATACACCATCTCGTCTGATATGCTCTCCACAGCCTGTGAGTTGTGGTAGTTATGAGAGCCCTGATCTCAAGAGTGCCTCATCTACGGATATATCAATGACAGACACACCTGCACAGTCTGCACCAAGAAGAGTGACCAGTTCTGATGTCAAACTGCAGATTATGACCACACAAAATTCGATTTTATGTAGTAAGCCTGTAAAAAGAGTTCTTTTTTCTCTTATGGAAGGTGATTATGATGCAGACAAGTTAGAATCAAGCAGAGATGCGCATGATAACATCCATGCAACTAGTAGAGGATGTACTGAGGGTTTAAATGATTCTAGTTCTGTTGTGCTATCCAAGAAGGTGGCAGAGAGCCTTGGTTCTTCTCATGAAATTACAAACCATGCTCAAGGTGGTTCAGCAACATGGCAGCAGATGTCTTCATCGTTGCTTGGCCTGGTTGATGTGATATACTCTATATTTTGTTCTGTCAAATGCTCTCCAATCACAAAAGAGGAGCTCCTGCACAAGATATTAATGAACAGTTTAGATTTTGTTGAGATAAGAGAAGTTGAAGAACGGATTGATTTTCTTGAAAAGGTGGTGCCAGATTGGCTCTACAGGAAGTTGGCTCCTAGTGGAGATGTTATGTACAGTATCAAGAAAGTGTCGGATTTGGACTCCGTTCGATCCAGGTTGTCTAGCAGTATGACTTTGTGA 1701 0.3951 MFNNLLRRSWAFFGQKTVFSVLCCFWRIDQKTMEESGQNALNFKCAKILHGVDKSITCQTPEKTSEPLSTKSKEGSVPLQRTYKAIADLFDHMGCSLRLLRLRKKSPTFQNICSQVEVLSKRKFSYMHLAQIKYILPEAIQIDKVLVHDKRNLCMKPDLKIALTYEVVQGHSSESPYMALWQLFNSRLIDFFNTHPEGTDIPEATLPEPFQQKTHSLTCEDLPVDSSTIVLSSTSNQNQQLLQECHPYPIKRHFSKKIVVAETEKIQRSSANQTALSCDSSNCLDNKRSESDSKWQKKYTPSCLKSDIMPNQDMERGQQKESSSICSQPSVVNTPSRLICSPQPVSCGSYESPDLKSASSTDISMTDTPAQSAPRRVTSSDVKLQIMTTQNSILCSKPVKRVLFSLMEGDYDADKLESSRDAHDNIHATSRGCTEGLNDSSSVVLSKKVAESLGSSHEITNHAQGGSATWQQMSSSLLGLVDVIYSIFCSVKCSPITKEELLHKILMNSLDFVEIREVEERIDFLEKVVPDWLYRKLAPSGDVMYSIKKVSDLDSVRSRLSSSMTL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1204 566 Gene3D - 467 565 IPR038090 -
Dere01g1204 566 SMART CDT1_2 79 208 IPR014939 -
Dere01g1204 566 SUPERFAMILY "Winged helix" DNA-binding domain 76 210 IPR036390 -
Dere01g1204 566 CDD Cdt1_m 61 226 IPR014939 -
Dere01g1204 566 MobiDBLite consensus disorder prediction 304 333 - -
Dere01g1204 566 MobiDBLite consensus disorder prediction 351 377 - -
Dere01g1204 566 PANTHER DNA REPLICATION FACTOR CDT1 63 561 IPR045173 GO:0003677|GO:0030174|GO:0071163
Dere01g1204 566 MobiDBLite consensus disorder prediction 312 333 - -
Dere01g1204 566 Pfam DNA replication factor CDT1 like 82 143 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1204 Dere-ChrDere01 24245097 24250576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1204 79 560 Core DNA Replication Machinery Family AT2G31270 28.831 1.57e-43 161