Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1198 ATGTTCAAGCATCGATTTCGGAACAGCTTTTTCCCTTGTCCACTTCGTCAAACTGTAAAACCAGAAAGACGAAGAAAAGGGTATGAATTTATCAAACTTTTGCATTCAATCTTATCATCTAGGGTCATCATGAACTACTTTTTCCTTGTGGTTTTGTTGCTTCTGTCACTGAACATGGTCTTCTCTGAGTTCCATCCAGAGGAAAGAGATGCTCTGTTGCTTCTGAGGGATTCCTTAACTTCTGCCTCTAACTTACACGGGAATTGGACAGGACCTCCATGTATAGACAATCTAAGTAGATGGGCAGGTATTACTTGTTCTAATTGGCATGTCGTTCACATTGTCCTTGAAGGGATTCATCTTCTTGGTTATTTGCCTCCTACATTCGCACAGAACATAACATTCTTGAGACAGCTTAACCTCAGAAACAATTCACTTTCTGGGCCTCTGCCAAATCTCATGAACTTGGTGTTCTTGGAACATGTTCTGCTTTCATATAATCACTTCTATGGGTCAATTCCAGAGGAGTATATTGGATTGCCCAGTCTGAAAGAATTGGAGCTGCAAGAGAATTACTTAGATAATCAAATCCCACCTTTTGATCAAGCATCATTGACAAATTTCAATATCTCTTATAATCATCTGGCAGGACCAATTCCTCAAACTTCTGTGCTGCTAAAGTTTCCTAAGAGCTCCTTTGACAATAATTCAGATCTCTGTGGGAAGCCATTGGATAAGTTGTGTCCTGCTCCTCCTCCTGCCCCTTCTTCTGCACCACCTCCTGGCATTATTGTTCCTCCAAGCCCATCAGTGGCCAAAGAAAAGAAAAGACTCCAAGTATGGACTATTGCTTTGATTGCTGCAGCAGCTGCACTGGTTCCTTTTCTGGTCATTATTGCTTTCTTGTTCTGTAATAAAAGGACTCAAGCAAAAGAAACAACAAGAAATGAATCTGCAGTAGGGTATGGTTTTGGAGCATGGGCAAAGAATATGATGTCTTATTCAGTGGGCACCGAAGATCCTGAAAGATCAGACAGATTGGAAATTTTCAACAAGGAATTACCAGTTTTTGACTTGGAGGATTTATTAAGGGCATCGGCAGAAATGCTAGGCAAGGGAAACTTAGGCACTACATATAAAGCAACGCTTGAAACTGGTGCTGTTTTTGCCGTAAAGAGATTTGACTACATGAATGGAATCAGCAAGAAGGAATTCCTCCAGCATATGCTATTGCTAGGAAGGTTGAAGCATGAAAATCTGGTTGAAGTCATCTCTTTCTATTACTCAGAGGAGGAAAAGCTGGTGGTTTCTGAGTTTATCCCTGATTGTTCTTTGTTTGAGCTCCTTCATGATAACAGAGGAGTTGGAAGAACTCCTCTTGATTGGTCCACAAGGCTGGCTATAATCAAAGACATAGCAAAGGGTCTAGCTTTCCTTCATCAATCTTTGCCTTCTCACAAGGTCCCCCATGCCAATCTAAGAACATCCAATGTCTTTGTCCATGAAGATGGCCAAGTTTATCGTTCCAAGCTCTCAGACTTTGGTTTCTTACCTTTGCTTTCTGCTAAAAAATCTGCAGAAAAGCTAAGCATCAGCAAGTCAACTGAATTTGTGCAAGGGAAGAAGCTGACACACAAAACTGATGTCTACTGCTTTGGAATTATCATACTAGAGGTAATAACTGGGAAAGTTCCGGGTGAAAGCATGGATGAGATTGGAGAAACAAGCAGTGATCTTTCTGACTGGGTGAGAATGGTGGTGAACAATGACTGGTCCACAGATATACTGGATGTAGAGATATTAGCTGCAAGAGAAGGGCATGGTGCTATGTTCGAGCTAACAGATATAGCTCTACAGTGTACAGATGTGGCACCAGAGAAACGGCCCACAATGAATGAAGTTTTGATGAGAATAGAAGAGATAGAGCAAATGAAAACAGACGATGACTGA 1950 0.4128 MFKHRFRNSFFPCPLRQTVKPERRRKGYEFIKLLHSILSSRVIMNYFFLVVLLLLSLNMVFSEFHPEERDALLLLRDSLTSASNLHGNWTGPPCIDNLSRWAGITCSNWHVVHIVLEGIHLLGYLPPTFAQNITFLRQLNLRNNSLSGPLPNLMNLVFLEHVLLSYNHFYGSIPEEYIGLPSLKELELQENYLDNQIPPFDQASLTNFNISYNHLAGPIPQTSVLLKFPKSSFDNNSDLCGKPLDKLCPAPPPAPSSAPPPGIIVPPSPSVAKEKKRLQVWTIALIAAAAALVPFLVIIAFLFCNKRTQAKETTRNESAVGYGFGAWAKNMMSYSVGTEDPERSDRLEIFNKELPVFDLEDLLRASAEMLGKGNLGTTYKATLETGAVFAVKRFDYMNGISKKEFLQHMLLLGRLKHENLVEVISFYYSEEEKLVVSEFIPDCSLFELLHDNRGVGRTPLDWSTRLAIIKDIAKGLAFLHQSLPSHKVPHANLRTSNVFVHEDGQVYRSKLSDFGFLPLLSAKKSAEKLSISKSTEFVQGKKLTHKTDVYCFGIIILEVITGKVPGESMDEIGETSSDLSDWVRMVVNNDWSTDILDVEILAAREGHGAMFELTDIALQCTDVAPEKRPTMNEVLMRIEEIEQMKTDDD 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1198 649 Gene3D Transferase(Phosphotransferase) domain 1 441 649 - -
Dere01g1198 649 SUPERFAMILY L domain-like 65 227 - -
Dere01g1198 649 SUPERFAMILY Protein kinase-like (PK-like) 368 638 IPR011009 -
Dere01g1198 649 Pfam Leucine rich repeat N-terminal domain 66 107 IPR013210 -
Dere01g1198 649 Gene3D Phosphorylase Kinase; domain 1 331 439 - -
Dere01g1198 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 51 643 IPR046959 -
Dere01g1198 649 Pfam Protein kinase domain 368 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1198 649 ProSiteProfiles Protein kinase domain profile. 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1198 649 Gene3D Ribonuclease Inhibitor 65 250 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1198 Dere-ChrDere01 24183522 24186003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1198 88 642 Receptor kinase-like Gene Family AT1G68400 36.273 6.21e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere01g1198 Pkinase 2.1e-31 CL0016