Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1197 ATGGCAACACGTAGGTATGCGTTTGGAAGGGTGGACGAAGCAACACACCCGGACTCCATGAGAGCCACCGTAGCTGAACTAGTGTCCACTTGCATCTTCGTGTTCGTGGGAGAGGGCTCGATCCTCGCTCTGGATAAGATATATAGGGATTCAGGGTCGTCGGCGGGGGAGCTGGTGGCGATAGCGCTGGCGCATGCGTTTGGGTTATTTGCGGCCATAGGGGCAAGCATGCATGTATCGGGGGGTCACGTGAACCCCGCCGTGACGTTCGGAGCTCTGCTGGGAGGAAGGATCTCGGTGCTGCGTGCTGTATACTATTGGGTTGCCCAACTTCTCGGTGCTATTCTCGCTGCTCTCTTGCTCAGGCTTGTTACCAATAACATGAGACCAGCGTCGTTCAACGTGTCAGTGGGTGTTGGAGCCATGCATGCACTTATATTTGAGATAGTGATGACGTTTGCGCTGATGTACACCGTTTATGGTACGGCCATTGATCCCAAGAGGGGCACCAATGGCGCATTGGCACCCTTGGCAATTGGGCTCATCGTGGGGGCTAACATCCTCGTTGGTGGGCCTTTCGACGGAGCATGCATGAATCCTGCCAGGGCTTTTGGGCCTTCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTACTGGGTGGGCCCACTCATCGGAGCTGGGCTTGCTGCACTCATTTATGAATACGTCGTTATCCCAACGGAGCCACCGCATCCTCACCAACCTTTAGCTCCTGAAGATTACTAG 768 0.5521 MATRRYAFGRVDEATHPDSMRATVAELVSTCIFVFVGEGSILALDKIYRDSGSSAGELVAIALAHAFGLFAAIGASMHVSGGHVNPAVTFGALLGGRISVLRAVYYWVAQLLGAILAALLLRLVTNNMRPASFNVSVGVGAMHALIFEIVMTFALMYTVYGTAIDPKRGTNGALAPLAIGLIVGANILVGGPFDGACMNPARAFGPSLVGWRWHYHWIYWVGPLIGAGLAALIYEYVVIPTEPPHPHQPLAPEDY 255
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1197 255 PANTHER AQUAPORIN-8 6 242 IPR034294 -
Dere01g1197 255 FunFam Probable aquaporin TIP1-1 4 251 - -
Dere01g1197 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Dere01g1197 255 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Dere01g1197 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g1197 255 Gene3D Glycerol uptake facilitator protein. 4 244 IPR023271 -
Dere01g1197 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere01g1197 Dere-ChrDere01 24180557 24182180 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1197 2 255 Major Intrinsic Protein MIP AT1G73190 68.939 7.27e-122 346