Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1186 ATGCAATTTTCTATCATCTCAAACATGGCTACAAGACTTATGTTTGAGAATTCCTGTGAAGTTGGAGTGTTTTCTAAACTTACCAATGCCTATTGTTTGGTTGCCATTGGAGGTTCTGAAAATTTCTACAGTGCATTTGAGGCTGAATTAGCAGATGTTATCCCTGTGGTGAAAACCTCCATTGGTGGCACACGCATTATTGGCCGCCTATGTGCTGGAAATAAGAATGGGCTTCTCTTGCCTCACACTACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGCATAGAAGAAAGATTATCTGCTCTTGGAAATTGTATAGCCTGTAATGACCATGTGGCCCTCACCCACACTGATCTTGACCGGGAAACTGAGGAGATGATTGCAGATGTTCTGGGAGTGGAAGTTTTTAGGCAGACCATTGCCGGTAATATTCTTGTTGGAAGTTATTGCGCCTTCTCGAACAGGGGTGGTCTGGTCCACCCTCACACTTCTATTGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACTGTGAATCGTGGAAGTGAGGTTATAGCTGCTGGGATCACAGTTAATGACTGGACAGCCTTTTGTGGTTCGGACACCACAGCAACAGAACTCTCTGTGGTTGAGAGTGTTTTCAAGCTTAGGGAAGCCCAGCCCAGTGCCATTGTGGACGAGATGAGGAAATCACTTATTGATAGCTACGTCTGA 762 0.4475 MQFSIISNMATRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGITVNDWTAFCGSDTTATELSVVESVFKLREAQPSAIVDEMRKSLIDSYV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1186 253 SMART eIF6neu2 11 212 IPR002769 GO:0042256|GO:0043022
Dere01g1186 253 Pfam eIF-6 family 12 211 IPR002769 GO:0042256|GO:0043022
Dere01g1186 253 PIRSF Transl_init_IF-6 9 234 IPR002769 GO:0042256|GO:0043022
Dere01g1186 253 CDD IF6 10 231 IPR002769 GO:0042256|GO:0043022
Dere01g1186 253 Hamap Translation initiation factor 6 [eif6]. 1 253 IPR002769 GO:0042256|GO:0043022
Dere01g1186 253 FunFam Eukaryotic translation initiation factor 6 9 233 - -
Dere01g1186 253 SUPERFAMILY Pentein 9 232 - -
Dere01g1186 253 Gene3D - 9 233 - -
Dere01g1186 253 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 9 252 IPR002769 GO:0042256|GO:0043022
Dere01g1186 253 NCBIfam translation initiation factor IF-6 12 232 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1186 Dere-ChrDere01 23977276 23981235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1186 9 253 Eukaryotic Initiation Factors Gene Family AT3G55620 91.020 8.03e-173 474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1548 06 29219930 29228000 Dere01g1186 01 23977276 23981235 CCT