Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1185 ATGGACGGAGAGAATAATGTGAACCATGTTGATGATGCATGTGACATAGAAAATGAAGGTCCACTGGATGGGAAGGACATTGGGAGGTACTGGTCGGAGTTTTCTGAAAAAAACATGACATATACAGAGCCACTTCTGGTGAAGAGGACTAACACCACCTCCCAGATTGCCATAGTTGGTGCCAACCTTTGCCCCATTGAAAGCCTTGACTATGAGATTTTTGAGAATGAAATATTTAAGCAGGACTGGAGGTCAAGGAAGAAGGTTCAGATATTCCAGTACGTGATACTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGCACTGGGCTAATTGGCTTCTTCAGTAATATTGCTGTTGAGAACTTAGCTGGTTTCAAGTTGCTTTGGACAACTAATCTCATGTCTAAACATAGATATTTTGAGGCTTTTCTAGCATATGCTGGTTGCAATATAGGTTTAGCAGCAGCAGCTGGAACCCTTTGTGCTTTCATTGCACCAGCAGCAGCAGGATCTGGTATTCCTGAGGTGAAAGCCTATCTCAATGGTATTGATGCTCACTCTATACTGGCTCCAAGCACTCTTTTTGTAAAGATTTTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTAGGCAAAGAGGGGCCTATGGTGCACACAGGTGCATGCATAGCTTCTTTGTTAGGGCAGGGAGGATCTCGCAAGTATGGCTTAACTTGGACATGGCTAAGGTATTTCAAAAATGATCGGGACCGGAGAGACATGATTACTTGTGGTGCTGCCGCCGGGGTTGCTGCTGCATTTCGTGCTCCTGTAGGTGGCGTTCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCTCTTCTTTGGAGGACTTTTTTCACAACAGCAGTAGTTGCTATTGTTTTGAGAGCCGGAATTCAGTATTGTGCCACTGGAAAATGTGGGCTATTTGGAGAAGGTGGTTTGATAATGTATGATGTTAGCGCAGCCAGAGTATCATACAATGGTGCTGATATAATAGCAGTATTACTCCTAGGAACCATTGGAGGCATTCTTGGGAGCATATACAATTACCTAGTGGATAAGGTTGTTCGTACCTATAGCATCATCAATGAAAAAGGCCCCTGTTTCAAAATCCTACTTGTTATTGCAATTGCTATTTTGACATCATGTTGTTCTTACGGCCTGCCATGGTTTGCAAAGTGCATCCCTTGTCCTACTGATTTGACAGTGAGCTGTCCCAGTGACTCTGGCAACTACAAGAGCTTTCAATGTCCACCTGGCTATTACAATGATCTTGCTTCCCTCTTTCAAAACACCAATGACGATGCTATTCGCAACCTATTCAGCACCAGTACAACCAGAGAATTTCGCATCTCCAGTCTCTTTATCTTCCTTGCTGCTATTTACTGTCTTGGGATAGTCACTTATGGTATTGCTGTTCCATCTGGGCTTTTTATTCCTGTGATACTTGCTGGTGCCGTCTATGGCCGGCTTGTTGGTAGACTATTTGAGCCAATCACGAAACTTGACACAGGCTTGTTTGCCCTCCTCGGAGCTGCATCCTTCCTTGGTGGAACCATGAGAATGACAGTCTCCCTTTGTGTTATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCTCTTGTGATGCTGGTCTTGTTAGTCTCGAAAACTGTGGCTGATAGCTTCAATGCTGGCGTCTACGATCAAATACTGAAGATCAAAGGACTTCCTTATTTGGAGGCCCATGCAGAACCTTATATGAGGAATTTAGTTGCACGTGATGTTGTCACCGGCCCGCTAGTCACCTTTTCTGGTATTGAAAGGGTAGGAAATATATTACATGCTCTGAGAACTACAGGGCATAATGGTTTTCCTGTCATTGATGAACCTCCTTTCTCAGATGCACCGGAGTTGTGTGGCCTTGTGCTTAGGTCTCATCTGCTGGTGCTTCTGAAGGGGAAGAACTTCTCGAAAGACAGAGTGTTTATGAGTCGAAATATCTTACAAAGAATTTCTGCATTAGATTTTGCAAAACCAGGATCAGGGAAAGGAATCAAACTAGAGGATATAGATATACAAGAGGAAGAGCTAGATATGTATGTTGATCTCCATCCCGTAACCAATGCGTCTCCATACACGGTGGTTGAGACTATGTCACTTGCTAAAGCTGCTATTCTTTTCCGCCAACTCGGTCTCAGGCACATGTGTGTGGTCCCAAAGAGTCAAGGGAGACCTCCAGTTGTTGGAATTCTAACGCGCCATGACTTCATGCCGGAGCATGTTTTGGGACTTTATCCTAATATCAAGCCTCACAGGTGGACTGAGTGA 2349 0.4436 MDGENNVNHVDDACDIENEGPLDGKDIGRYWSEFSEKNMTYTEPLLVKRTNTTSQIAIVGANLCPIESLDYEIFENEIFKQDWRSRKKVQIFQYVILKWGFALLIGLGTGLIGFFSNIAVENLAGFKLLWTTNLMSKHRYFEAFLAYAGCNIGLAAAAGTLCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYGLTWTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAGIQYCATGKCGLFGEGGLIMYDVSAARVSYNGADIIAVLLLGTIGGILGSIYNYLVDKVVRTYSIINEKGPCFKILLVIAIAILTSCCSYGLPWFAKCIPCPTDLTVSCPSDSGNYKSFQCPPGYYNDLASLFQNTNDDAIRNLFSTSTTREFRISSLFIFLAAIYCLGIVTYGIAVPSGLFIPVILAGAVYGRLVGRLFEPITKLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVADSFNAGVYDQILKIKGLPYLEAHAEPYMRNLVARDVVTGPLVTFSGIERVGNILHALRTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSKDRVFMSRNILQRISALDFAKPGSGKGIKLEDIDIQEEELDMYVDLHPVTNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPNIKPHRWTE 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1185 782 Pfam Voltage gated chloride channel 155 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 ProSiteProfiles CBS domain profile. 713 777 IPR000644 -
Dere01g1185 782 SUPERFAMILY CBS-domain pair 590 764 IPR046342 -
Dere01g1185 782 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 769 - -
Dere01g1185 782 SUPERFAMILY Clc chloride channel 76 589 IPR014743 -
Dere01g1185 782 FunFam Chloride channel ClC3 90 406 - -
Dere01g1185 782 CDD ClC_6_like 67 586 - -
Dere01g1185 782 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 766 - -
Dere01g1185 782 Gene3D Clc chloride channel 90 586 - -
Dere01g1185 782 PRINTS Chloride channel signature 535 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 PRINTS Chloride channel signature 573 587 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 PRINTS Chloride channel signature 517 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 PRINTS Chloride channel signature 167 184 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 PRINTS Chloride channel signature 262 281 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere01g1185 782 SMART cbs_1 717 768 IPR000644 -
Dere01g1185 782 SMART cbs_1 606 659 IPR000644 -
Dere01g1185 782 PRINTS Plant CLC chloride channel signature 297 307 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere01g1185 782 PRINTS Plant CLC chloride channel signature 315 322 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere01g1185 782 PRINTS Plant CLC chloride channel signature 283 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere01g1185 782 PRINTS Plant CLC chloride channel signature 437 453 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere01g1185 782 PRINTS Plant CLC chloride channel signature 72 80 IPR002251 GO:0005247|GO:0006821|GO:0016020
Dere01g1185 782 Pfam CBS domain 717 763 IPR000644 -
Dere01g1185 782 Gene3D - 587 769 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1185 Dere-ChrDere01 23947647 23953283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1185 8 777 Ion Channels AT5G49890 72.258 0.0 1118