Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1178 ATGGCCTCCTCCAGGCGGCTTAGGGCATTCAAGCGATGGATGAAATCCCATGGTTTCGAATTCAGCGAGGCACTGGAGTTCGTGGACGATCCAGAGGATGGAATTTCTGTTAGAGCTTTGTGCCAATTGAAGGACGGCGATGTTATTTCCAGAATACCAAAGGATGCTTGCCTGACGATTAAGACTAGTGGGGCGCGTCAAATGATTGAAGACGCTGGTTTGGATGGTTATCTGGGGCTAGCAGTGGCTCTGATGTATGAGAGAAGCTTGGGCGAGGAGTCACCCTGGGCCGGATACCTTCAGCTCTTGCCACGCCAAGAGTGCTTGCCACTAGTTTGGACTTCGAATGAAGTGAACGAACTTTTGAGTGGGACTGAGCTACACATGATAGTGCAAGAGGACAAAACTCTTATCTATGAGGACTGGAAAGAGAATATTCAGCCCATATTGGATTCTGCACCTTCAAAGGTCAACCCAAAGTATTTTGGTATAGAAGAATATTTTGCTGCAAGAAGTCTTATTGCTTCGCGATCTTTTGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTGTTCAATCATAAAACAGATGCTGAGGATGTGCATTTCACTTCTGTATCCTCTAATGATGAATCTGACAATGATATTGATGGAAATAGCAGTGAGTGTGTCACTGATGAAGATGAATTGGCTCAAAATTCTTCAATAGATGAGACTGAGTTGGATACAGCTCTTAATGGGAAATGCAATGGTAGCAACTTGGATTCATCTTTGGTTGTGGGAGGTGATGCTTCAATGCTGGAGATGATTATGATAAAAGATGTCAGCATTGGAGCTGAGGTATTTAATACTTATGGGTCAATGGGTAATGCTGCTTTACTTCATAGATATGGATTTACTGAGCAAGATAATCCCTATGATATCGTGAACATTGATTTAGAACTAGTTCTTCAGTGGTGTTCTTCTTTATTTTCTGGTCGATACAGTAGAGCAAGAGTCTCTCTTTGGAGAAGGTTGGGCTATTCTGCAAGTGTCAGCCAAAACTCAGAATATTTTGAGATATCCACTGATGGAGAACCCCAAATGGAACTCCTGGTTTTATTACGCATTATGTTATTACCAGAAGATGCGTACCATAAGTTAGACATTTCAGTGTCGATTGCAGGAAATAATCCTGAATCAAGCGAAACTACTCTTTCAGGTGAATATACTATCTTGTCAAAAAAAGCATCTGATATTAGCAAGAAATCATTGCTGACTAGAAAAGTTTGTGATGCTCTATTGTCTATCGCTGATATGCGTGAGAGTCTCTATGGTCTGAACTCAATGGAAGATGATATTGAGGCATTAGGGAGGTGTAATTGTGTTAGAGAAAGAAAGCTATTCCATTCTTTGATGCTGCGCATCAGTGAAAGAAAGATCCTTGAAAAGCTAAAAAATTTTGCTGCCCAGCCATTTGAAATTGCTAAGCGAAATTCTACAAGGAAGAAGTTGAAAAGCACAACAAAGTAA 1524 0.4121 MASSRRLRAFKRWMKSHGFEFSEALEFVDDPEDGISVRALCQLKDGDVISRIPKDACLTIKTSGARQMIEDAGLDGYLGLAVALMYERSLGEESPWAGYLQLLPRQECLPLVWTSNEVNELLSGTELHMIVQEDKTLIYEDWKENIQPILDSAPSKVNPKYFGIEEYFAARSLIASRSFEIDDYHGFGMVPLADLFNHKTDAEDVHFTSVSSNDESDNDIDGNSSECVTDEDELAQNSSIDETELDTALNGKCNGSNLDSSLVVGGDASMLEMIMIKDVSIGAEVFNTYGSMGNAALLHRYGFTEQDNPYDIVNIDLELVLQWCSSLFSGRYSRARVSLWRRLGYSASVSQNSEYFEISTDGEPQMELLVLLRIMLLPEDAYHKLDISVSIAGNNPESSETTLSGEYTILSKKASDISKKSLLTRKVCDALLSIADMRESLYGLNSMEDDIEALGRCNCVRERKLFHSLMLRISERKILEKLKNFAAQPFEIAKRNSTRKKLKSTTK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1178 507 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 300 489 IPR036464 -
Dere01g1178 507 Gene3D - 306 486 IPR036464 -
Dere01g1178 507 ProSiteProfiles SET domain profile. 23 290 IPR001214 GO:0005515
Dere01g1178 507 Pfam SET domain 34 290 IPR001214 GO:0005515
Dere01g1178 507 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 452 - -
Dere01g1178 507 CDD SET_LSMT 24 304 - -
Dere01g1178 507 SUPERFAMILY SET domain 4 208 IPR046341 -
Dere01g1178 507 SUPERFAMILY SET domain 263 308 IPR046341 -
Dere01g1178 507 Gene3D set domain protein methyltransferase, domain 1 3 303 - -
Dere01g1178 507 PIRSF RMS1_SET 1 489 IPR011383 GO:0016279|GO:0018026
Dere01g1178 507 MobiDBLite consensus disorder prediction 208 236 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1178 1 502 NAC Transcription Factor Family AT3G56570 58.287 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere01g1178 SET 1.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1178 01 23682435 23686372 Dere01g1178 01 23682435 23686372 ECH