Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1176 ATGAACTCTGGAAATGTTTATATTGATCGCAAGAGGCCAAGCCTTCCTTTAGCTATGGAGGAGGTTGGGTCAGAGAAAAGGAAGAAGACGATGGTAAGGTACAAGGAATGCCTGAAGAACCATGCAGCTGCAATTGGCGGGAATGCGACTGACGGATGTGGAGAATTCATGGCTTCAGGAGAAGAAGGTACTCCAGACTCTCTCAAGTGCTCTGCCTGCAATTGTCACAGAAACTTCCACAGAAAACACATTGAATCTGAGAGCTCTGATTGCTTTGCGTCTCCATGTTATGACTGCCATCTTCCTCCACAGCTGCTTCCTCATAATGAGAGAGCTGATCAGATTATGAAACCCATTTTGGCCCATAGTTTGTGTCCCATAAAGTATGATAAAGGAGGGTCAAATGCTTCTGATCATGAGTCTGATGAGAAGGCGGGTGATGAGGGGGTGATGAGGAAGAGGTTCAGGACCAAGTTCAGTGAGGAGCAGAAGGAGAAGATGCTGAGATTTGCAGAGAAGGTTGGGTGGAGGATGCAGAAGGTGGAGGAATCTGTGGTGCAGCAGTTTTGTGAAGAAGTTGGAATCAAGAGGAGAGTCCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTGCCAAGAGAAACCTCATCTCCACGAGCTGA 663 0.4661 MNSGNVYIDRKRPSLPLAMEEVGSEKRKKTMVRYKECLKNHAAAIGGNATDGCGEFMASGEEGTPDSLKCSACNCHRNFHRKHIESESSDCFASPCYDCHLPPQLLPHNERADQIMKPILAHSLCPIKYDKGGSNASDHESDEKAGDEGVMRKRFRTKFSEEQKEKMLRFAEKVGWRMQKVEESVVQQFCEEVGIKRRVLKVWMHNNKNTFAKRNLISTS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1176 220 FunFam Zinc-finger homeodomain protein 2 138 213 - -
Dere01g1176 220 Pfam ZF-HD protein dimerisation region 32 84 IPR006456 -
Dere01g1176 220 SUPERFAMILY Homeodomain-like 146 213 IPR009057 -
Dere01g1176 220 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 210 - -
Dere01g1176 220 NCBIfam homeobox domain, ZF-HD class 152 209 IPR006455 -
Dere01g1176 220 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 34 83 IPR006456 -
Dere01g1176 220 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 33 83 IPR006456 -
Dere01g1176 220 Gene3D - 136 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1176 Dere-ChrDere01 23661955 23662617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1176 25 214 ZF-HD Transcription Factor Family AT2G02540 48.815 4.77e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere01g1176 ZF-HD_dimer 4.1e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1176 01 23661955 23662617 Dere01g1176 01 23661955 23662617 ECH