Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1173 ATGGTCGTGAGCGGAGGGAAGCCATTGAAGCGGATGAAGAGGAGAGTTACAGCTGATTTCTACGATTTCCTCACGTTTCCGTCCTTGTCACTCGCCGGAGCAGAGGATTTCTCTGGCGGACCCTTCCGGGCAAACGTGCGATCGTTCCTGTCGAAGCACGCGCTGCTTCCGCCGCCGTCGGCTCTGTTCCCTCACCTGCTGACGTGGCAGATCCTGTTCCGCGTCGGTGACCTGACGGACGGCCCGGACTCGAGTCCGGCAGTGGTGTGTCTCGACGTGGTCGAAGAGGATGTGGCCAGATCCAGATCCATCTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCAGTATGCGGAAAACGTTACCATTTTATAATCAAGGCTGATGGTAGTTCCATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAGTGCAAGTCATGTAACCATGTGTCAACCACAGATGATGTTGAAGACTGGGTCTACCACCAGTTAGAAAACACAACTCATCTTTTACATGGGGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGTGTTAATGGCAGAGAAGGTGGCTCAAAATTTCTTTCTGGGTGCCATATCATGGACTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTTTCTAAGAAATATGGGTTGGAGTACCGCCTGCTTCATGCTATCACAAAAGGACATCCTTGGTATGGTGACTGGGGTTTTCAGTTTGGCTCTGGTAGTTATGGTCTTACACATGAAGCATATAAGTCTGCTGTTGAATGCCTGTCCAATCTGCTGTTGTCCATATTTCTATCCCAGGGGCAGAAATGTGACTCTCGTGTGCAAGACATGATCTCATATTACCAGTCTTTGTCAAAGAATGAGCTTGTAAATATAAGGGACCTCTTTTGCTTTTTAATGGGATTGATTCATGATGCTCATAAGACTGCTACATCAAAGGATATTGATGACAACTGCAAGAAGCGACGTGTGAATGCTGCTGGAGTGTCATCCTCATGGACAAAGAGTGACATTGAACGTGTGGAGGAAACCATGCTCAGAGTGCTGCGTGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGTGCTCTAAGGGGTGCTGTCTGCAAGGTGGCGTCTCCTGAGCTGCTTGATTATTGCCTTGGAGAATTGGGAGGAAAAGTGGTCCTTGGTGCAATGGTGAATACTCGATGCAATCCTGTTACTGGTGCTTTTGAGTACAGACTAGAGACGGGGAGCAATTCTTGCTATGGACTTGCGAGCAATAATTCGGGCTACCCATCTGAAGTGAATCTTCTGCATGACTTGAGATATTTGTACAATTCTCTGCTTCATCCGCAGATGATGTTGAGCTATGATCCAGAAGAGAGAAGGGCACTTGCTAGGAGCTCTGCGCAGAAACTTCTTGACTGCAAGCAGTTTGTAAAGGATTATAAACTTGAGATGCTGCCAATGACAAACCTGTCTAAGATACGCCTCTTGTGTCAATTAGAACTTGTGGATGAATCTGAAGATTCTGATGCACACCCTCCGCCAGAATTAGTTGTCCTACCTGTAAATGCCACGGTATCCGACCTCAAGATTGAAGCAGCTAATGCTTTTCAAGATGTATATGTCGTGTTTAGAAGACTTCAAGTTGATGAGCTTCTTGGCTATAGTGGTGTAGATGATTCCACCCAGGTCAAGCACTTGTTAGGATCAATGATTGAAGCAGTTCGGGTGCAAGGTAGATGCATGGGCAAGAACGGGTTGAACAAGTTCCAAATGGAACGGGGCATCGAGAGGTGGACTGTGGATTGCAGCTGTGGGGCCAAGGACGATGATGGGGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGAGGCACACAAGGTGTTCTGGTATTCATGATGCAGATCCTGTACCTGCGCGGTTCGTTTGCCCAAGATGCCGGAACTGTGACTCGAAACCCAAATCTAGTGGGTACTGCGAAGATGAAATTGTCATTGATATTAGTGCTAACAATAGCTGCTTTGGAAACACTTTGCTAGTGCCTTCTGATGTTCGTTGA 2127 0.4772 MVVSGGKPLKRMKRRVTADFYDFLTFPSLSLAGAEDFSGGPFRANVRSFLSKHALLPPPSALFPHLLTWQILFRVGDLTDGPDSSPAVVCLDVVEEDVARSRSIYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVSTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKGHPWYGDWGFQFGSGSYGLTHEAYKSAVECLSNLLLSIFLSQGQKCDSRVQDMISYYQSLSKNELVNIRDLFCFLMGLIHDAHKTATSKDIDDNCKKRRVNAAGVSSSWTKSDIERVEETMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGAMVNTRCNPVTGAFEYRLETGSNSCYGLASNNSGYPSEVNLLHDLRYLYNSLLHPQMMLSYDPEERRALARSSAQKLLDCKQFVKDYKLEMLPMTNLSKIRLLCQLELVDESEDSDAHPPPELVVLPVNATVSDLKIEAANAFQDVYVVFRRLQVDELLGYSGVDDSTQVKHLLGSMIEAVRVQGRCMGKNGLNKFQMERGIERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSGIHDADPVPARFVCPRCRNCDSKPKSSGYCEDEIVIDISANNSCFGNTLLVPSDVR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1173 708 CDD PHD_MMD1_like 624 669 - -
Dere01g1173 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 675 IPR013083 -
Dere01g1173 708 SMART PHD_3 624 670 IPR001965 -
Dere01g1173 708 Pfam PHD-finger 625 672 IPR019787 -
Dere01g1173 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 680 - -
Dere01g1173 708 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Dere01g1173 708 SUPERFAMILY FYVE/PHD zinc finger 618 676 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1173 Dere-ChrDere01 23625287 23630657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1173 83 669 PHD Transcription Factor Family AT5G22260 29.308 3.38e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere01g1173 PHD 8.2e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1173 01 23625287 23630657 Dere01g1173 01 23625287 23630657 ECH