Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1172 ATGAAGCAAAGTTGGGGGAGCATTGGCAATAGGGAAAGTCTTCTATGTGGATTTGGGATATTGATATTTCAATACCCAAATTTATGGTTTGAGAATTCTGAGCAGACTCGTTTTGGTTCCGTATTCAACAAATTGGTGAAGGAGATAGGGAATCCGGTTGACTTTGAACTTCCAGATTGGTTTAAGTGGAAACCAATGCCATACAACTTTATAAAACGCAATATATATCTTACAAAGAAGGTCAAGAGACGGCTGGATGATGATGGCATATTCTGTTCCTGTACTCCTTCCCAATTATCTTCTGGTGTATGTGGTAAAGATTGCCAATGCGGGATGCTTCTGTCTAGCTGCTCTTCAGGCTGTAAATGTGGTAGCTCCTGTCTCAATAAACCATTTCAGCATCGACCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGCGGTTCTGGAATTGTGGCTGATGAAGATATCAAACAAGGGGAGTTTGTTATAGAATATGTCGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACACCGAGGGGAGACAAACTTCTACTTATGTGAAATTAATCGAGATATGGTGATTGATGCAACATATAAGGGGAACAAATCAAGATATATAAATCATAGTTGCTGCCCCAATACGGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATAAGGAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGACCAAGATTGCCACTGTGGTGCTGTCGAGTGCAGGAGAAAGCTGGGGGTCCGACCTACCAAGCCTAAAATGTCATCAGATGCTGCACTAAAATTAGTTGCATATCAGGTTTATCAGAATGGGGGTTTACATGTAGGACGTTCTTGTGCTATTGACCAATCAAAGTACTTGCACAATTGCATTGGTGAAGTTATTAGGATAAATCACCCCATAAATGAGAGGTGTTTTGGGATTATAAAGCGGTTTGATAAATATTCCAAAAAACATACGATTATGTTTGAAGATGGTGGTGTTGAATTTATTGACTTGTCAAAAGGAGATTGGGAACTTGTGAGATTGTGA 1125 0.3947 MKQSWGSIGNRESLLCGFGILIFQYPNLWFENSEQTRFGSVFNKLVKEIGNPVDFELPDWFKWKPMPYNFIKRNIYLTKKVKRRLDDDGIFCSCTPSQLSSGVCGKDCQCGMLLSSCSSGCKCGSSCLNKPFQHRPVKKMKLVQTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAVECRRKLGVRPTKPKMSSDAALKLVAYQVYQNGGLHVGRSCAIDQSKYLHNCIGEVIRINHPINERCFGIIKRFDKYSKKHTIMFEDGGVEFIDLSKGDWELVRL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1172 374 FunFam Histone-lysine N-methyltransferase 55 293 - -
Dere01g1172 374 SMART shorttest3 87 137 IPR006560 GO:0005634|GO:0042054
Dere01g1172 374 ProSiteProfiles SET domain profile. 138 255 IPR001214 GO:0005515
Dere01g1172 374 SMART PostSET_3 261 277 IPR003616 -
Dere01g1172 374 Gene3D SET domain 48 293 IPR046341 -
Dere01g1172 374 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 62 315 IPR025787 -
Dere01g1172 374 SMART set_7 138 261 IPR001214 GO:0005515
Dere01g1172 374 ProSiteProfiles AWS domain profile. 87 136 IPR006560 GO:0005634|GO:0042054
Dere01g1172 374 Pfam SET domain 149 254 IPR001214 GO:0005515
Dere01g1172 374 PANTHER SET DOMAIN PROTEINS 59 292 - -
Dere01g1172 374 SUPERFAMILY SET domain 65 273 IPR046341 -
Dere01g1172 374 CDD SET_ASHR3-like 139 277 - -
Dere01g1172 374 ProSiteProfiles Post-SET domain profile. 261 277 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1172 Dere-ChrDere01 23617088 23622611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1172 111 273 C2H2 Transcription Factor Family AT2G23740 34.426 1.53e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere01g1172 SET 3.9e-20 No_clan