Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1164 ATGACAATTCTTTATCTCAGTATTTCACTGAAAAAATGGCATTGGAATGAACAATATGGATATGTTCATTGCTATATTAGACCAAAGCAAGGCCTTTTCAACATAATAGTTGAAGCAATAATCTTAGCAATAACAGAGTTTTGCATGGTGCAAGGAATGGCAGGCCCACGTAGTAAAGGAAGCAGGGATATGATGAATCTAGACTTTTTGGAGATTGGAGGAGGAGGAGGTGGTGCACTCTTTGCATCAATTGCTCTCTTTCCTCTGCCGGCGAGCCCGTGCGTCTTTGCGGCAAGAGGAAGGATGAGTGGGAGACACGACGATGAGGAGAAGGGTTTGCTGTGGAAACTTCCGGTGGTGAAGTCCAGGGATTTGGGCAAGGTGGGACCCGCCTTTGGAGTTGGCGTCGGCTGTGGGTTCGGCTTCGGAGTTGGCCTTCTCGGAGGGGTGGGAATTGGTCCTGGAATACCTGGGTTGCAAGTTGGTTATGGATTTGGTGCTGGTTGTGGAGTTGGTTTAGGATTTGGGTATGGAGTGGGGAAGGGAATTGCTCAAGATGAGAACAAAAGATACTCAAATGTCGGAAATTTATTCCGTGGATCACAAAACCTTCCTTCTCAGGACGATTTAACTGCACTTGTGGATGAACTTGTCATTAATACCAAAAAGCTTATCAGAACAACAACGAGAGAAATTGACAGATGTTCAATGGGAAACCCATCACACCCTGACGTGGCACGTCCACATCCACGAAAACCATGCATATACCATTGGCTCCTACGCCCCTCTGCCTTCCATCCTTCATCTGAACTTTTCATCTGCGTAGTATCTCAGAGGCTTCCGACCATGGCCTCCCTCGTCGTGTCTGAGATGCTCGGAAGCCCTCTAAACTTCAGCGGCGCCACCAGGTCGGCTCCACCACCGTCACCGTCTAGCCCTGCCACTTTCAAGACCGTCGCTCTTTTCTCCAAGAAGAAGCCAGCTTCACCGCCGGCGAAGCAAAAGGCTGCCGCAGTCTCTCCGGCCAACGAGGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCGGAAGGTCTCTTGGACAGATCGGAGATCCCGGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTATGACCCATTTCGTCTCAGCAAGAAGCCAGAGGACTTCGCCAAATATCAGGCATACGAGTTGATCCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATTTGGGGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGAATACCTTGAACTACTTCGGGAAACCCATCCCCATCAACCTCATTGTTGCTGTCATTGCTGAGGTTGTTCTTGTTGGTGGTGCTGAGTACTACAGAATTATCAACGGCCTCGACTTGGAGGACAAGCTTCATCCAGGTGGTCCATTTGATCCACTGGGGCTAGCAAACGATCCAGACCAGGCAGCTCTGCTGAAGGTGAAGGAGATCAAGAACGGAAGACTTGCCATGTTTGCAATGCTGGGTTTCTACTTCCAAGCTTATGTGACTGGAGAAGGTCCTGTGGAGAACCTTGCTAAACATCTCAGTGACCCTTTTGGCAACAACTTGCTCACTGTCATTGCTGGTTCTGCTGAGAGGGCTCCCACTCTGTGA 1704 0.4971 MTILYLSISLKKWHWNEQYGYVHCYIRPKQGLFNIIVEAIILAITEFCMVQGMAGPRSKGSRDMMNLDFLEIGGGGGGALFASIALFPLPASPCVFAARGRMSGRHDDEEKGLLWKLPVVKSRDLGKVGPAFGVGVGCGFGFGVGLLGGVGIGPGIPGLQVGYGFGAGCGVGLGFGYGVGKGIAQDENKRYSNVGNLFRGSQNLPSQDDLTALVDELVINTKKLIRTTTREIDRCSMGNPSHPDVARPHPRKPCIYHWLLRPSAFHPSSELFICVVSQRLPTMASLVVSEMLGSPLNFSGATRSAPPPSPSSPATFKTVALFSKKKPASPPAKQKAAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFRLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINLIVAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1164 567 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 316 556 IPR001344 GO:0009765|GO:0016020
Dere01g1164 567 SUPERFAMILY Chlorophyll a-b binding protein 348 558 - -
Dere01g1164 567 FunFam Chlorophyll a-b binding protein, chloroplastic 356 567 - -
Dere01g1164 567 Gene3D Chlorophyll a/b binding protein domain 356 567 - -
Dere01g1164 567 Pfam Chlorophyll A-B binding protein 369 530 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1164 Dere-ChrDere01 23521510 23531039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1164 283 567 Chloroplast and Mitochondria Gene Families AT4G10340 83.158 9.17e-149 427