Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1157 ATGGAAGAAAAAGAGAGTTTTATTTCTGGGGTCGCCATGAAGGCTAACGAAGCCCCGGATAGCCACCACGTAGCTCCTAGAAGTGAAAACTACGGGCAGTTTGGCGGGCCCACTGGGGCAGTGCCGGCGCCAGTTCCGGATATGGCTCCAACTTCAGCTTCAGCTCCAGCGCCACTCAGTGTGGCAGCGGCGACGCCGAGTACGGATGTAGTAAAGAAGAAAAGGGGAAGGCCTAGGAAGTATGGGCCTGACGGCAAAGTAGCGTTGGCGTTGTCGCCGATGCCAATTTCATCTTCAATTCCGTTGACTGGTGACTTCTCATTGTGGAAACGGGGTAGAGGGCGGCCACTTGAATCGATCAAGAAGTCGTACAAGCATGAATTTGAAAGTCCACCACCAGGTGAGGGAATTGCATTCTCTGTTGGTGCCAATTTCACACCCCATGTGCTTACTGTTAATGCTGGCGAGGATGTTACTATGAAGGTCATGTCCTTCTCTCAACAGGGTTCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTTCGTCAACCAACTTCTTCTGGGGGTACTCTAACATATGAGGGGCGATTTGAGATTCTTTCCTTGTCTGGTTCATTTGTGCCAACTGACAACGGTGTAACAAGGAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCTGGTCCAGATGGTCGAGTTGTGGGAGGTGGCCTTGCTGGTCTGTTGGTAGCAGCAGGGCCTGTGCAGGTTGTCGTGGGCAGTTTTCTTCCAGGCCACCAACTGGAGCAGAAACACAAGAAGCAAAAGATGGATCATTTTTCAACCATTTCCCCTGGACACATTAATCCCAACTCAGTCGAAGAAATAAAAGTCAGTTTCGGTGGCGTGAAGCCTATTATGACGCCTGCCGCTTTTCAAGTAGACAACAATTTTGCTTCTTTTAACAATGTCAATGGCAATGGCTCTAGCAACTCATCTGCTGCTGATGATGATATTACAACTTTGCCTGAAAAGGAGTCTAACCCCGGCCAAACAAATGCTGGAGTAGGCATGCTAAACGATTTCACTTTGAGTTAA 1092 0.4844 MEEKESFISGVAMKANEAPDSHHVAPRSENYGQFGGPTGAVPAPVPDMAPTSASAPAPLSVAAATPSTDVVKKKRGRPRKYGPDGKVALALSPMPISSSIPLTGDFSLWKRGRGRPLESIKKSYKHEFESPPPGEGIAFSVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFVPTDNGVTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQLEQKHKKQKMDHFSTISPGHINPNSVEEIKVSFGGVKPIMTPAAFQVDNNFASFNNVNGNGSSNSSAADDDITTLPEKESNPGQTNAGVGMLNDFTLS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1157 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 263 - -
Dere01g1157 363 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
Dere01g1157 363 MobiDBLite consensus disorder prediction 1 86 - -
Dere01g1157 363 Gene3D - 147 280 - -
Dere01g1157 363 ProSiteProfiles PPC domain profile profile. 139 284 IPR005175 -
Dere01g1157 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 333 IPR039605 GO:0003680
Dere01g1157 363 CDD DUF296 146 260 IPR005175 -
Dere01g1157 363 MobiDBLite consensus disorder prediction 326 363 - -
Dere01g1157 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1157 Dere-ChrDere01 23444217 23448491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1157 62 321 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 55.518 6.50e-95 287
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1485 06 27887618 27892492 Dere01g1157 01 23444217 23448491 CCT
Dere06g1485 06 27887618 27892492 Dere01g1157 01 23444217 23448491 ECH
Dere01g1157 01 23444217 23448491 Dere01g1157 01 23444217 23448491 ECH