Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1153 ATGGATCCACCACTTTGCGCGAATGGCTGTGGCTTCTATGGCTCGTCTGAAAGCAACAACTTGTGCTCACAGTGTTACAAAGAACATCTCCTCACATGCTCACGGAAGATCACTAAATTATTATTGAAGAACAACACTGTGTCATCATCATTAGTTGATGATCAAGAATCATTAGCTGATGATCAAGATTTAACAATAGTAACTGAAAGTGAAGCTAGTAACTCTGACTCTGAGACTAAGATAATTGTTGAGACTTCCATTAATGAATTAGATGCTTTAGATTATCAAAAGAAGAAAAAGAGGTGCAAGAGTTGCAAGAAAAAGGTTGGACTGTTAGGGTTTGAATGTAGATGTGGGAACTTATTCTGTGGAAGGCATAGATACCCAGAAGAGCATTCTTGCACTGTGGATTATAAGCAGATTGGTCGTCAACTCTTGCTCAAACAGAATCCTACCTGTGAGGCTGACAAGATGAATGAGAGACTCTAG 489 0.3926 MDPPLCANGCGFYGSSESNNLCSQCYKEHLLTCSRKITKLLLKNNTVSSSLVDDQESLADDQDLTIVTESEASNSDSETKIIVETSINELDALDYQKKKKRCKSCKKKVGLLGFECRCGNLFCGRHRYPEEHSCTVDYKQIGRQLLLKQNPTCEADKMNERL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1153 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 34 - -
Dere01g1153 162 SMART AN1_Zf_4 102 139 IPR000058 GO:0008270
Dere01g1153 162 FunFam Zinc finger AN1-type containing 6 72 157 - -
Dere01g1153 162 SUPERFAMILY AN1-like Zinc finger 83 156 IPR035896 -
Dere01g1153 162 Gene3D - 1 51 - -
Dere01g1153 162 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 159 - -
Dere01g1153 162 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Dere01g1153 162 Pfam A20-like zinc finger 5 27 IPR002653 GO:0003677|GO:0008270
Dere01g1153 162 Pfam AN1-like Zinc finger 102 139 IPR000058 GO:0008270
Dere01g1153 162 ProSiteProfiles Zinc finger AN1-type profile. 96 142 IPR000058 GO:0008270
Dere01g1153 162 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Dere01g1153 162 Gene3D - 71 157 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1153 Dere-ChrDere01 23362514 23363002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1153 5 158 C2H2 Transcription Factor Family AT3G52800 36.538 1.88e-27 99.4