Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g1149 | ATGGATCCACCACTTTGCGCGAATGGCTGTGGCTTCTATGGCTCGTCTGAAAGCAACAACTTGTGCTCACAGTGTTACAAAGAACATCTTCTCACATGCTCACGGAAGATCACTAAATTATTATTGAAGAACAACACTGTGTCATCATCATTAGCTGATGATCAAGATTTAACAATAGTAACTGAAAGTGAAGCTAGTAACTCTGACTCTGAGACTAAGATAATTGTTGAGACTTCCATTAATGAATCAGATGCTTTAGATTATCAAAAGAAGAAAAAGAGGTGCAAGAGTTGCAAGAAAAAGGTTGGACTGTTAGGGTTTGAATGTAGATGTGGGAACTTATTCTGTGGAAGGCATAGATACCCAGAAGAGCATTCTTGCACTGTGGATTATAAGCAGATTGGTCGTCAACTCTTGCTCAAACAGAATCCTACTTGTGAGGCTGACAAGATGAATGAGAGACTCTAG | 468 | 0.3953 | MDPPLCANGCGFYGSSESNNLCSQCYKEHLLTCSRKITKLLLKNNTVSSSLADDQDLTIVTESEASNSDSETKIIVETSINESDALDYQKKKKRCKSCKKKVGLLGFECRCGNLFCGRHRYPEEHSCTVDYKQIGRQLLLKQNPTCEADKMNERL | 155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g1149 | 155 | Pfam | A20-like zinc finger | 5 | 27 | IPR002653 | GO:0003677|GO:0008270 | |
| Dere01g1149 | 155 | SMART | AN1_Zf_4 | 95 | 132 | IPR000058 | GO:0008270 | |
| Dere01g1149 | 155 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 34 | - | - | |
| Dere01g1149 | 155 | Gene3D | - | 65 | 150 | IPR035896 | - | |
| Dere01g1149 | 155 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 2 | 152 | - | - | |
| Dere01g1149 | 155 | ProSiteProfiles | Zinc finger AN1-type profile. | 89 | 135 | IPR000058 | GO:0008270 | |
| Dere01g1149 | 155 | Gene3D | - | 1 | 53 | - | - | |
| Dere01g1149 | 155 | SMART | A20_3 | 3 | 27 | IPR002653 | GO:0003677|GO:0008270 | |
| Dere01g1149 | 155 | SUPERFAMILY | AN1-like Zinc finger | 76 | 149 | IPR035896 | - | |
| Dere01g1149 | 155 | FunFam | Zinc finger AN1-type containing 6 | 65 | 150 | - | - | |
| Dere01g1149 | 155 | Pfam | AN1-like Zinc finger | 95 | 132 | IPR000058 | GO:0008270 | |
| Dere01g1149 | 155 | ProSiteProfiles | Zinc finger A20-type profile. | 1 | 34 | IPR002653 | GO:0003677|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g1149 | Dere-ChrDere01 | 23318988 | 23319455 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g1149 | 5 | 153 | C2H2 Transcription Factor Family | AT3G52800 | 34.177 | 9.46e-27 | 97.4 |