Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1147 ATGGATCCACCACTTTGTGCGAATGGCTGTGGCTTCTATGGCTCGTCTGAAAGCAACAACTTGTGCTCACAGTGTTACAAAGAACATCTTCTCACATGCTCACGGAAGATCACTAAATTATTATTGAAGAACAACACTGTGTCATCATCATTAGCTGATGATCAAGATTTAACAATAGTAACTGAAAGTGAAGCTAGTAACTCTGACTCTGAGACTACGATAATTGTTGAGGCTTCAATTAATGAATCAGATGCTTTAGATTATCAAAAGAAAAAAAAGAGGTGCAAGAGTTGCAAGAAGAAGGTTGGACTGTTAGGGTTTGAATGTAGATGTGGGAATTTATTCTGTGGAAGGCATAGATACCCAGAAGAGCATTCTTGCACTGTGGATTATAAGCAGATTGGTCGTCAACTCTTGCTCAAACAGAATCCTACCTGTGAGGCTGACAAGATGAATGAGAGACTCTAG 468 0.3953 MDPPLCANGCGFYGSSESNNLCSQCYKEHLLTCSRKITKLLLKNNTVSSSLADDQDLTIVTESEASNSDSETTIIVEASINESDALDYQKKKKRCKSCKKKVGLLGFECRCGNLFCGRHRYPEEHSCTVDYKQIGRQLLLKQNPTCEADKMNERL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1147 155 Pfam A20-like zinc finger 5 27 IPR002653 GO:0003677|GO:0008270
Dere01g1147 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 152 - -
Dere01g1147 155 SMART AN1_Zf_4 95 132 IPR000058 GO:0008270
Dere01g1147 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 34 - -
Dere01g1147 155 FunFam Zinc finger AN1-type containing 6 65 150 - -
Dere01g1147 155 Gene3D - 65 150 IPR035896 -
Dere01g1147 155 ProSiteProfiles Zinc finger AN1-type profile. 89 135 IPR000058 GO:0008270
Dere01g1147 155 Gene3D - 1 53 - -
Dere01g1147 155 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Dere01g1147 155 Pfam AN1-like Zinc finger 95 132 IPR000058 GO:0008270
Dere01g1147 155 SUPERFAMILY AN1-like Zinc finger 75 149 IPR035896 -
Dere01g1147 155 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1147 Dere-ChrDere01 23252075 23252542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1147 5 153 C2H2 Transcription Factor Family AT3G52800 33.544 5.84e-26 95.1