Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1136 ATGCCTTCTCTACTTGTCTCTGATGTTGTTCCCTCTGAGACTCCCAAAGATAAGAAGGAGAAGAAGAAGAAGCTGAAGAACCAGACTCCAATTGAAGATGATGGATTATCGGTCAAGAAGAAGGAGAGCAAGAAGCGTAAAGCTTTGGATGTTGAGATTATGACGGATGAGGTTGACCAGAAGAGTGAGACTAGTTCCGAGTTGGTTGAGCCCGATAGTTCGAAACCTCAGAGTGAGGAGAAGAGGAAGAAGAAAAAGGCCAAGCTGGGCGAATCTGAACCACTGGAGGAAGAGGTTGAGAAGGAGGATCCTAATGCAATTTCGAACTTCAGGATATCGGCGCCGTTGAGGGCGAAGTTGAAGGAGAAGGGGATTGAGTCATTATTTCCCATTCAGGCCATGACTTTTGATACCGTTTTTGATGGGTCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTGCCTATATTGGAGTCCTTAACAAATGGTCCAAAAAAAGCAGTGAGAAAGACTGGATATGGAAGGTCTCCAAGTGTTCTTGTGCTTTTACCTACTCGAGAGTTGGCCAATCAGGTGTATGCTGATTTTGAAGTTTATGGTGGGGCACTGGGATTGACTTCTTGCTGTTTGTATGGTGGAGCTTCATATCAAGCTCAAGAAACTAAACTCAAAAGAGGCGTTGATATTGTTGTTGGAACTCCAGGACGCATAAAAGATCATATCGAGAGGGAAAATATTGACCTGAGCCAAGTAAAGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTGGGTAAAGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCGTATTTCTACAAAATTTCTGAAATCAGATAAGAAAACTGCTGACCTGGTTGGCAATGAGAAAATGAAAGCTAGCACCAATGTTAGGCATATTGTTCTCCCATGTTCTCGTTCTGCCAGGTCCCAGCTTATTCCAGATGTTATACGCTGCTATAGCAATGGAGGCCGGACAATTATATTCACTGAGACAAAGGAATCTGCTTCTGAGCTTGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAGGCACAGCGTGAGGTTACATTGGCTGGTTTCAGATCTGGGAAATTTACAACATTAGTGGCCACTAATGTGGCAGCTCGGGGTTTGGACATTAATGATGTTCAATTAATTATCCAGTGTGAGCCCCCACGTGATGTAGAAGCCTATATCCATCGATCTGGGCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCAAGAAAGTCAACTATATCTAAAATAGAAAGAGAATCGGGTGTGAAATTTGAACACATATCCGCTCCCCAGCCTGCTGATATTGCCAAAGCTGTTGGGGGGGCAGCTGCTAAAATGATAACCCAAGTGTCTGAAAGTGTGATCCCTGCATTCAAATCTGCTGCTGAGGATCTTTTAAACAGCTCAGGTTTATCAGTAGTTGAGTTACTTGCAAAAGCTCTAGCCAAGACTGCTGGTTATACCGAGATAAGAAAAAGATCACTGCTCACTTCCATGGAGAACCATGTTACATTACTTCTTGAGATTGGAAAACCCATCTTCACCCCCTCTTCTGTATTTGGAGTCCTGAGGAGATTCTTGCCTGAGGAGAAGGTTGAGGCAGTGAAGGGTCTTACTATCACTGCAGATGGAAATGGTGCTGTTTTTGATGTCCCAGCTGAAGATGTACCAACATATCTTGCTGGTCAGGAAAATGCTGCTAATGTAAGTTTAGAAATATTAGAAACACTGCCAAGTTTGCAAGAAAGAGATCAATCAAGAAGTGGTAGATTTGGTGGTGGTGGTGGTCGTGGTGGCAGTGGGAACAGGTTTTCTGGTGGAAGGGGTGGTGGCAGGAATGGTGGTGGATTTTCTAATCAGAGAAATCGTAGGTTTTCCAATGATTCTAGGGGTGGGAGAGGTCGTGGCAACAAGGGGGGAAAGAGGTGGTAA 2091 0.4457 MPSLLVSDVVPSETPKDKKEKKKKLKNQTPIEDDGLSVKKKESKKRKALDVEIMTDEVDQKSETSSELVEPDSSKPQSEEKRKKKKAKLGESEPLEEEVEKEDPNAISNFRISAPLRAKLKEKGIESLFPIQAMTFDTVFDGSDLVGRARTGQGKTLAFVLPILESLTNGPKKAVRKTGYGRSPSVLVLLPTRELANQVYADFEVYGGALGLTSCCLYGGASYQAQETKLKRGVDIVVGTPGRIKDHIERENIDLSQVKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPDWVKRISTKFLKSDKKTADLVGNEKMKASTNVRHIVLPCSRSARSQLIPDVIRCYSNGGRTIIFTETKESASELAGLLPGARALHGDIQQAQREVTLAGFRSGKFTTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSTISKIERESGVKFEHISAPQPADIAKAVGGAAAKMITQVSESVIPAFKSAAEDLLNSSGLSVVELLAKALAKTAGYTEIRKRSLLTSMENHVTLLLEIGKPIFTPSSVFGVLRRFLPEEKVEAVKGLTITADGNGAVFDVPAEDVPTYLAGQENAANVSLEILETLPSLQERDQSRSGRFGGGGGRGGSGNRFSGGRGGGRNGGGFSNQRNRRFSNDSRGGRGRGNKGGKRW 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1136 696 Gene3D - 330 556 IPR027417 -
Dere01g1136 696 SMART ultradead3 124 336 IPR014001 -
Dere01g1136 696 Gene3D - 557 628 - -
Dere01g1136 696 Pfam DEAD/DEAH box helicase 129 306 IPR011545 GO:0003676|GO:0005524
Dere01g1136 696 SMART helicmild6 373 450 IPR001650 -
Dere01g1136 696 FunFam DEAD-box ATP-dependent RNA helicase 7 556 628 - -
Dere01g1136 696 Pfam Helicase conserved C-terminal domain 355 450 IPR001650 -
Dere01g1136 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 489 IPR001650 -
Dere01g1136 696 SUPERFAMILY RNA-binding domain, RBD 543 625 IPR035979 GO:0003676
Dere01g1136 696 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 262 270 IPR000629 -
Dere01g1136 696 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 65 507 - -
Dere01g1136 696 MobiDBLite consensus disorder prediction 635 696 - -
Dere01g1136 696 Pfam GUCT (NUC152) domain 539 634 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dere01g1136 696 CDD DEADc 116 313 - -
Dere01g1136 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 318 IPR014001 -
Dere01g1136 696 MobiDBLite consensus disorder prediction 1 102 - -
Dere01g1136 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 462 IPR027417 -
Dere01g1136 696 Gene3D - 50 318 IPR027417 -
Dere01g1136 696 CDD GUCT_RH7_like 546 631 - -
Dere01g1136 696 CDD SF2_C_DEAD 333 459 - -
Dere01g1136 696 MobiDBLite consensus disorder prediction 12 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1136 Dere-ChrDere01 23008700 23015767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1136 142 489 Eukaryotic Initiation Factors Gene Family AT1G72730 31.161 1.81e-41 154