Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1134 ATGAAAATCCCTATCCTCAGAAAAAATTTCCCAAGGGGACCGTCAAATGTGGAAGTTGGTAAAGCATTTCTTCGTGTTGCGCCTCATGTAAGCAGCAAACAAAGGAAAAGACAAAGGACAAAGACAGGCGTCATGGCCGGCCTATATGCCAAAATCCATCTCACAGAGGGTCGTACCATCCCCTGCTTTGCATTGCATCTGAGCTCGAAACGTGTCGAATTTCATGGCCAAGATGACTGGAATGAAGAAGCGTTGAAAGATGGACTGTACGCTGATCGACACGTTATCTATGCCATCATCTTGCCAGGACATTCATTATCTTCATTGGTATATGTACTTGAAATTGCCTCCGCAACTACCAGTCTGAGACAGTGCAGAAGACACAGAGAGAGAGAGGATATGGGAAGAGGAAGAGTGGTTCTGGAGAGAATAGAGAACAAGATCAACAGGCAGGTCACGTTCTCGAAGAGAAGGAATGGTTTGCTGAAGAAAGCCTACGAGCTCTCTGTGCTGTGCGATGCTGAAGTCGCTCTTATTATCTTTTCCAGCCGTGGGAAGCTTTTCCAGTACAGCAGCTCTGACATACACAGAACCATTGAACGTTATCGCCAATGTTGTTACATCTCACAGGCCAACGACTTAGTTGAACATGGATCACAGAGCTTGTACCAGGAGCATTTGAGATTGAAAGTGAAACATGAATCCCTTGAGAGGACACAAAGGCATTTGCTAGGAGAAGATCTTGAGCCACTTAGCATGAAAGAGTTGCATAATCTTGAGAAACAACTTGAGAGAACGCTCACACAAGCGCGACATCGTAAGACGCAGAAGATGATGGAACGAGCAGATGAGTTACGCCAAAAGGGGCAAAACCTAGAGGAGCTCAACAAACAACTCAAGTCCAAGCTTCAAGAAATATATGAATGTAGCCAAACCCTTGAAGATCTTGAAGTCAACCAAATGGAATCAGAGGCAAGTCGGAACAACTTACAAATATGGCATGGGCAGCACCAAGGTAGTTCGAAGGGGAAAGCAATTGACACGAGGACAGCGGGTGGACAAAGCACTCATAACAGCAACGGATGGCTTCCTTGA 1095 0.4557 MKIPILRKNFPRGPSNVEVGKAFLRVAPHVSSKQRKRQRTKTGVMAGLYAKIHLTEGRTIPCFALHLSSKRVEFHGQDDWNEEALKDGLYADRHVIYAIILPGHSLSSLVYVLEIASATTSLRQCRRHREREDMGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFQYSSSDIHRTIERYRQCCYISQANDLVEHGSQSLYQEHLRLKVKHESLERTQRHLLGEDLEPLSMKELHNLEKQLERTLTQARHRKTQKMMERADELRQKGQNLEELNKQLKSKLQEIYECSQTLEDLEVNQMESEASRNNLQIWHGQHQGSSKGKAIDTRTAGGQSTHNSNGWLP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1134 364 Pfam K-box region 218 303 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere01g1134 364 ProSitePatterns MADS-box domain signature. 136 190 IPR002100 GO:0003677|GO:0046983
Dere01g1134 364 PANTHER SERUM RESPONSE FACTOR HOMOLOG 136 317 - -
Dere01g1134 364 Coils Coil 275 312 - -
Dere01g1134 364 PRINTS MADS domain signature 136 156 IPR002100 GO:0003677|GO:0046983
Dere01g1134 364 PRINTS MADS domain signature 171 192 IPR002100 GO:0003677|GO:0046983
Dere01g1134 364 PRINTS MADS domain signature 156 171 IPR002100 GO:0003677|GO:0046983
Dere01g1134 364 SMART madsneu2 134 193 IPR002100 GO:0003677|GO:0046983
Dere01g1134 364 CDD MADS_MEF2_like 135 210 IPR033896 GO:0000977|GO:0045944
Dere01g1134 364 SUPERFAMILY SRF-like 135 219 IPR036879 GO:0003677|GO:0046983
Dere01g1134 364 ProSiteProfiles MADS-box domain profile. 134 194 IPR002100 GO:0003677|GO:0046983
Dere01g1134 364 Coils Coil 253 273 - -
Dere01g1134 364 ProSiteProfiles K-box domain profile. 219 309 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere01g1134 364 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 143 190 IPR002100 GO:0003677|GO:0046983
Dere01g1134 364 FunFam MADS-box transcription factor 1 146 217 - -
Dere01g1134 364 Gene3D - 146 207 IPR036879 GO:0003677|GO:0046983
Dere01g1134 364 MobiDBLite consensus disorder prediction 335 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1134 Dere-ChrDere01 22924055 22932104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1134 134 329 MADS-box Gene Family AT2G45650 59.184 1.98e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere01g1134 K-box 2.7e-23 No_clan