LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g1128	ATGCCCTCTAACTGTTTCTGCTGTTTCCTCCCCCAAGAAGATCAGCAAATCAAAACAAGAAGTGACAGCAAGAATAGGGACTATCCATGGGAAATGTACACTCTGAAGGAGCTGCTTCGAGCAACGAACAATTTCCATCAAGATAACAAGATTGGAGAGGGTGGCTTTGGTAGTGTTTATTGGGGTCGAACAAGCAAAGGCATCGAGATTGCAGTGAAGCGACTGAAGACGATGACAGCAAAGGCAGAGATGGAATTTGCAGTAGAAGTAGAAGTACTTGGGAGGGTGAGGCATAAGAATCTGTTGGGTCTGAGAGGATTCTATGCAGGAGGAGATGAAAGACTCATTGTGTATGATTACATGCCTAATCATAGCTTGCTCACCCATTTGCACGGCCAGCTTGCTTCAAATTGTCAGCTAGATTGGCCTAAAAGAATGAGCATAGCGATTGGAGCAGCCGAAGGCCTCACGTATTTGCATCATGAGGCAAATCCTCACATTATACATAGAGACATAAAGGCAAGCAATGTTCTTCTGGACACTGAGTTTCAAGCCAAGGTGGCTGACTTTGGTTTCGCAAAGCTAATACCAGAAGGCGTAAGCCATCTGACCACAAGGGTCAAAGGAACCTTGGGATATCTAGCCCCAGAATACGCCATGTGGGGAAAGGTTTCAGAAAGCTGCGACGTGTACAGCTTTGGGATTTTGCTTCTGGAGATAATTAGTGCGAAGAAACCCATTGAGAAATTACCAGGAGGAGTGAAAAGGGACATAGTTCAGTGGGTGACACCTTACGTCCAAAAGGGTATCTTCAATCATATTGCAGATCCAAAACTGAAGGGTAAGTTTGACATGGAGCAGTTGAAATCTGTGGTGATGATAGCCATAAAATGCACTGATAGTAGCCCCGAGAAGAGACCCAGTATGGTGGAGGTGGTGGAGTGGCTCAAGGGCGGTGTTGGGAGGAGAAGAAAAGAGATTCCATCTGTGAGGGACGTCAATGGAGACCCAGAAAATGACAAGAGTAATGATTCCGACTATGAGGAGATGATGGGAAAGAGGAAGTCCAACTTCAGAATACCAAGCGATAGGTATAAAATAAGATGA	1107	0.4526	MPSNCFCCFLPQEDQQIKTRSDSKNRDYPWEMYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGIEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLASNCQLDWPKRMSIAIGAAEGLTYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGVKRDIVQWVTPYVQKGIFNHIADPKLKGKFDMEQLKSVVMIAIKCTDSSPEKRPSMVEVVEWLKGGVGRRRKEIPSVRDVNGDPENDKSNDSDYEEMMGKRKSNFRIPSDRYKIR	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g1128	368	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468
	Dere01g1128	368	Gene3D	Transferase(Phosphotransferase) domain 1	121	327	-	-
	Dere01g1128	368	SUPERFAMILY	Protein kinase-like (PK-like)	26	332	IPR011009	-
	Dere01g1128	368	ProSiteProfiles	Protein kinase domain profile.	45	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1128	368	PANTHER	OS01G0253100 PROTEIN	24	322	-	-
	Dere01g1128	368	MobiDBLite	consensus disorder prediction	326	368	-	-
	Dere01g1128	368	SMART	serkin_6	45	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1128	368	FunFam	PTI1-like tyrosine-protein kinase At3g15890	17	120	-	-
	Dere01g1128	368	FunFam	PTI1-like tyrosine-protein kinase At3g15890	121	330	-	-
	Dere01g1128	368	Pfam	Protein kinase domain	45	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1128	368	Gene3D	Phosphorylase Kinase; domain 1	10	120	-	-
	Dere01g1128	368	ProSitePatterns	Protein kinases ATP-binding region signature.	51	73	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g1128	Dere-ChrDere01	22780856	22782482	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g1128	18	317	Receptor kinase-like Gene Family	AT2G48010	44.262	1.93e-82	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Dere01g1128		Pkinase	1.1e-44	CL0016