Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1127 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTGATCCCATTTTCTAATAGCCCCCAACGCATCAAGATCTCGGAAGATCTGATTCTGGATCATGATTATGCTTCTCTCCGTGTCACCAATTCTGATAAAGAATTCAGTGAGGCTCCATTAAGGAGCAAAGTATCTCATGGCAGTAATAATAATCCTAACGAATACCAGAAGAAGAAGAAGATGAAGATGAAGATGATGATCCACAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCACCCTCAGATCGCTTATCCCTCTTAAGTACATCAAGGGAAAGCGTTCGATATCAGATCACACGAACGGGTCAGTGACTTATATAAAGCACCTGCAGAAGAATATTCAAGAGCTTGGTGCGAAGAGAGATGAACTGAAGAAAGTGAAACACTCCGACGCTAACTTGGAAAACCCTGAGGGCCAAAACGCATCAAGAAGCTTTACTGTCCATGAGAACAATGGTATTGTGGGAATTGGGATTACCAGTAACTTCAAAGAGGAAAGGTTTCCTCTTTCGAAATTGCTGGAATTACTGCTTGAAGAAGGACTTGAAGTTGTTTCTTGTCTCTCCACCCAAGTCAATGGTAGAATACTTCACAGTGTCCATTGTGAGGTGTGCAATGTTTCATAA 672 0.4256 MFPLQRGNELVIPFSNSPQRIKISEDLILDHDYASLRVTNSDKEFSEAPLRSKVSHGSNNNPNEYQKKKKMKMKMMIHREIERQRRQEMATLHATLRSLIPLKYIKGKRSISDHTNGSVTYIKHLQKNIQELGAKRDELKKVKHSDANLENPEGQNASRSFTVHENNGIVGIGITSNFKEERFPLSKLLELLLEEGLEVVSCLSTQVNGRILHSVHCEVCNVS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1127 223 Gene3D - 63 153 IPR036638 GO:0046983
Dere01g1127 223 CDD bHLH_AtORG2_like 78 141 - -
Dere01g1127 223 FunFam Transcription factor bHLH126 64 153 - -
Dere01g1127 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Dere01g1127 223 Pfam Helix-loop-helix DNA-binding domain 78 126 IPR011598 GO:0046983
Dere01g1127 223 Coils Coil 122 142 - -
Dere01g1127 223 MobiDBLite consensus disorder prediction 45 69 - -
Dere01g1127 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 141 IPR036638 GO:0046983
Dere01g1127 223 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 59 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1127 Dere-ChrDere01 22762349 22763566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1127 78 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 45.695 2.48e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g1127 HLH 2.2e-07 No_clan