Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1122 ATGGATGTAGATGGGAGCAATAAGCGCGTGTTCCAGCGTCTCCGTGGGCCTCCGGCTGATACCAAGCACCAGAAAGTGTGTTATCATTGGCTGGCAGGCAAGTGCAATAGGTTTCCGTGCTCGTTTCTGCACAGTGAATTACCTCCTCCAAACGCCAATGGAATGTCTTCGAAAAGGTCCCATGCGTCTGCTGATGATTCAGGATTCTCAGGTCCACGGAGAAATCCGAATTTGAGTGGAGCTTCAACGTGGGGCCGGGTTCAAGGTGGCGGAGCCGTAGCTGGTAATAGAATATTTAGGAAGACTGAAAAAGTTTGTAATTATTGGGTTCAAGGGAGTTGCAGTTATGGAGAAAGGTGTAAGTTCCTTCACTCTTGGAGTGTAGGGGATGGTTTTTCCTTGCTGACACAACTCGAAGGACATCAGAAGGTTGTTAGTGGAATAGCCCTGCCATCTGGTTCTGATAAGCTTTATACTGGAAGTAAGGATGAGACAGTAAGGCTTTGGGACTGCCAGTCTGGTCAGTGTATGGCTGTGATCACTCTTGGTTGTGAAGTGGGTTGTATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATACCTAATTTTATTAAGGCGTGGAACACTCAAACTTCAATGGAGCTAAGTCTGAGTGGCCCTGTTGGACAAGTTTATGCGTTGGCTGTGGGTAATGATATGCTCTTTGCTGGCACACAGGATGGGTCTATATTAGCATGGAAGTTTAATGTGGCTACAAACTCCTTTGAGCCTGTTACATCGCTTAAAGGTCACTCCCTTGCTGTTGTTTCATTTGTTGTCGGAGCTAATAGGCTATACTCGGGTTCTATGGACAATACAATAAGAGTCTGGAACCTTGAGACTTTGCAGTGTTTACAGACATTAACTGAGCATACATCAGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTTTTATCTGGTTCATTAGACAAAACAGTCAAGGTATGGGCAGCCACGGAAAGGGGTAACTTGGAAGTGACTTATACTCACAGTGAGGAACATGGTGTACTTAACCTCTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAATGATAATACTGTGCGCCTCTATGATTTACCATCATTCGCAGAGAGAGGTAAGATTTTTACAAAGCAAGAGGTTCGAGCCATTCAGATAGGTCCCGGTGGCCTATTCTTCACTGGTGATGGAACAGGTCAAGTGAGGGTCTGGAATTGGTTATCGGAGTCCACTACTCCGGTCCAATAA 1287 0.4584 MDVDGSNKRVFQRLRGPPADTKHQKVCYHWLAGKCNRFPCSFLHSELPPPNANGMSSKRSHASADDSGFSGPRRNPNLSGASTWGRVQGGGAVAGNRIFRKTEKVCNYWVQGSCSYGERCKFLHSWSVGDGFSLLTQLEGHQKVVSGIALPSGSDKLYTGSKDETVRLWDCQSGQCMAVITLGCEVGCMISEGPWVFVGIPNFIKAWNTQTSMELSLSGPVGQVYALAVGNDMLFAGTQDGSILAWKFNVATNSFEPVTSLKGHSLAVVSFVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSGSLDKTVKVWAATERGNLEVTYTHSEEHGVLNLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFTKQEVRAIQIGPGGLFFTGDGTGQVRVWNWLSESTTPVQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1122 428 Pfam Zinc finger domain 106 124 - -
Dere01g1122 428 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Dere01g1122 428 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g1122 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 170 - -
Dere01g1122 428 Gene3D - 216 427 IPR015943 GO:0005515
Dere01g1122 428 MobiDBLite consensus disorder prediction 51 85 - -
Dere01g1122 428 Pfam WD domain, G-beta repeat 134 170 IPR001680 GO:0005515
Dere01g1122 428 Pfam WD domain, G-beta repeat 256 291 IPR001680 GO:0005515
Dere01g1122 428 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Dere01g1122 428 SMART WD40_4 210 247 IPR001680 GO:0005515
Dere01g1122 428 SMART WD40_4 294 331 IPR001680 GO:0005515
Dere01g1122 428 SMART WD40_4 381 418 IPR001680 GO:0005515
Dere01g1122 428 SMART WD40_4 254 291 IPR001680 GO:0005515
Dere01g1122 428 SMART WD40_4 131 170 IPR001680 GO:0005515
Dere01g1122 428 SMART WD40_4 335 378 IPR001680 GO:0005515
Dere01g1122 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Dere01g1122 428 PANTHER - 9 424 IPR044715 -
Dere01g1122 428 FunFam Zinc finger CCCH domain-containing protein 48 126 216 - -
Dere01g1122 428 SUPERFAMILY WD40 repeat-like 126 421 IPR036322 GO:0005515
Dere01g1122 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 330 IPR001680 GO:0005515
Dere01g1122 428 Gene3D - 92 125 - -
Dere01g1122 428 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
Dere01g1122 428 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Dere01g1122 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 300 IPR001680 GO:0005515
Dere01g1122 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 179 IPR001680 GO:0005515
Dere01g1122 428 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Dere01g1122 428 PRINTS G protein beta WD-40 repeat signature 157 171 IPR020472 -
Dere01g1122 428 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Dere01g1122 428 FunFam Zinc finger CCCH domain-containing protein 48 218 426 - -
Dere01g1122 428 SUPERFAMILY CCCH zinc finger 101 125 IPR036855 GO:0046872
Dere01g1122 428 SMART c3hfinal6 102 126 IPR000571 GO:0046872
Dere01g1122 428 SMART c3hfinal6 23 46 IPR000571 GO:0046872
Dere01g1122 428 Gene3D - 126 215 IPR015943 GO:0005515
Dere01g1122 428 MobiDBLite consensus disorder prediction 51 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1122 Dere-ChrDere01 22652577 22657811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1122 233 418 Miscellaneous Gene Families AT5G08390 27.551 1.84e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere01g1122 WD40 0.00028 CL0186