Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1120 ATGGGTAAAGGCGGGATGTCGCGTGAAGATCATGGGGAAGAAGAGAATATGGCAGCTTGGCTTGTTGGTATCAATGCCCTGAAGATTCAACCATTCAAGCTTCCGATTCTGGGGCCCCATGATGTCAGAATTAGGATGAAAGCTGTTGGTATCTGTGGCAGTGATGTTCACTTCCTCAAGACACTGAGATTGGCAGATTTTATAGTGAAAGAACCAATGGTTATTGGTCATGAGTGTGCAGGGATCATAGAAGAAGTTGGCAGTGAGGTAAAGAATCTGGTACCTGGTGACCGTGTGGCAATTGAACCTGGGATTAGTTGCTGGAGTTGTAACCTCTGCAAAGAAGGTCGATATAATTTATGCCCTGATATGAAGTTCTTTGCTACTCCACCAGTTCACGGTTCCCTTGCTAATCAGATAGTGCATCCTGCATACCTATGTTTTAAACTTCCAGATAATGTGAGCTTGGAGGAGGGGGCAATGTGTGAACCCTTGAGTGTTGGTGTTCATGCCTGCCGCCGAGCTAATATTGGACCAGAAACAAATGTATTGATCATGGGAGCAGGACCTATTGGACTAGTCACAATGCTTTCAGCTCGAGCTTTCGGAGCGCCCAGGATCATCCTTGTGGATGTGGATGACCATCGTTTATCCGTTGCGAAAACTCTGGGTGCAGATGACATTGTTAAAGTTTCAACAAATATACAGGATGTGAGTGAAGAAGTAATACAGATACACAAGGCTATGGGAGCTGGTGTGGATGTTGCCTTTGATTGTGTAGGTTTCAACAAAACCATGGCTACAGCGTTGAGTGCTACTAGTCCAGGCGGCAAAGTGTGCTTAGTGGGATTGGGTCATCATGAAATGACTGTTCCACTCACGCCAGCTGCTGCAAGGGAAGTTGATGTAATTGGAATTTTCCGCTACAAGAACACATGGCCTCTTTGCCTCGAGTTTCTGAGGAGTGGCAAGATCGACGTAAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAGAGGGAGGTGGAAGAAGCCTTTGAAACCAGTGCTCGTGGTGGCAATGCCATTAAGGTTATGTTCAATCTGTAG 1089 0.4601 MGKGGMSREDHGEEENMAAWLVGINALKIQPFKLPILGPHDVRIRMKAVGICGSDVHFLKTLRLADFIVKEPMVIGHECAGIIEEVGSEVKNLVPGDRVAIEPGISCWSCNLCKEGRYNLCPDMKFFATPPVHGSLANQIVHPAYLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGAPRIILVDVDDHRLSVAKTLGADDIVKVSTNIQDVSEEVIQIHKAMGAGVDVAFDCVGFNKTMATALSATSPGGKVCLVGLGHHEMTVPLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQREVEEAFETSARGGNAIKVMFNL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1120 362 Pfam Zinc-binding dehydrogenase 190 320 IPR013149 -
Dere01g1120 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Dere01g1120 362 CDD sorbitol_DH 18 361 IPR045306 GO:0016616
Dere01g1120 362 SMART PKS_ER_names_mod 23 360 IPR020843 GO:0016491
Dere01g1120 362 FunFam Sorbitol dehydrogenase 167 307 - -
Dere01g1120 362 Gene3D - 167 307 - -
Dere01g1120 362 SUPERFAMILY GroES-like 16 188 IPR011032 -
Dere01g1120 362 Pfam Alcohol dehydrogenase GroES-like domain 39 149 IPR013154 -
Dere01g1120 362 PANTHER SORBITOL DEHYDROGENASE 15 362 - -
Dere01g1120 362 Gene3D - 26 349 - -
Dere01g1120 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 326 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1120 Dere-ChrDere01 22626142 22629727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1120 29 295 Monolignol Biosynthesis Gene Families AT4G37980 27.338 4.82e-18 81.6