Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1118 ATGGGATTTGAGGGTGTGTTTGGTGGGGGAGTGCGGATGAAGGGGGCAAAGCCAGGACCAGAATCTCGTGAGGAGCTGATCTCACAGATGATTTACGAGGATACACGCCAGTTTAGCATAACGTCCATGGGCTCTTCAATTCTCCACCTTGCTTCTCCCACCCTCTTCTTCCCTCTCAAACCAACACTTCCATTCTCCTCTCCTTCGCCACTTCTTCAATTACCCCCACTTTCCTCCTCTTCTCTTCCCCTGCGTAGTAGAACTCTATTTAAGACAATTACAACCCCACTTGCCTATGTGACCGGACCCGCATCCGACCCCATTTTCAGTGAGTCCGATCCTAAGATAGATGAGTCGGATCCTCGACCGGAGAACGTCCAGCCACCCAGCGTCATAAGCTGGGGGCTTCTGTGGAAGCATTTGATGAAACACAAATGGCGGCTTGCGGTTTCAGCTGTCACTCTAATTTGTTGCACCTGTTGTACTCTTTCTATGCCCATATTTTCTGGTCAATTTTTTGAAGTACTAATTGGTGCTAGACCTGAACCATTATGGAGGCTGCTCAGCAAGGTTGGAATTCTGTATGCCCTGGAGCCACTTTTAACTGTTATTTTTGTTGTAAACATGAACCTAATCTGGGAGAAGGTTATGTCGACTTTAAGAGCTCATATCTTTGGAAGGATATTGATTCAGAAGGTGGAATTTTTTGACAGGTACAAGGTTGGTGAACTCACTGGTTTGTTAACATCTGATTTGAATTCTCTTAAAGATATTGTGAGTGAGAACATTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGCAAGCATTTCTTCACCAGTCAGAAGTTGTTGGGACGATATGCATACTTTTTGCTTTATCACCGCAACTTGCTCCAATTCTAGGCATTCTGATTCTCACAATTTCTGCTTTACTGTCTACAAGAGATCAACTTTGCCAGTTTTTAAAGCACATGGGTTGGTTCAAGCATCCATATCTGACTGTGTTGCAGAAACTTTTTCTGCTATTCGTACTGTAAGATCCTTTGGTGGTGAGAAACGCCAGATGTTTACTTTTGCTAACCAGGTTCTTTCTTACCAATCAAGTGGGATAAAACTTGGGATTTTCAAATCTGCTAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTACTGGCATTATACATCATTGGCGGAAGCAAAGTAAAAGCGGGTGAACTCTCTGTTGGAACTGTGGCATCTTTTATTGGATACACTTTCACATTAACTTTTGCTGTTCAAGGACTGGTCAATACTTTTGGAGATCTTCGTGGAGCTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTCTCTGGGGTTCAGATTGATGAAGCCCTTGCTTATGGCTTGGAAAGAGAACTGAAACAGAAAGAATTGGACAATGATAACTATAAACTATTTTTCTCTGATAATACTTCTGAGAAAAGCCAAAACAAATACTTGCATTACATGTCAGCACTGAAATCGTCAAACAGTTTTTTTAGCTTAGCCTGGTCTGGAGATGTTTCTCTTGAAGATGTGTATTTCTCTTATCCTTTGAGGCCAGATGTGGAAATCTTAAGTGGCTTAAATTTGACACTAAAATGTGGAACTATTACTGCATTGGTGGGTCCTAGCGGTGCAGGCAAAAGTACAATAGTACAGCTATTGGCTCGTTTTTATGAGCCAGCAAAAGGTCGTATAACAGTTGCTGGAGAGGATGTTCGAACTTTTGACAAGAGTGAATGGGCTCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTATTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGATAATGTTTCTAAAGACGATGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTCATAATTTCACTTCCACAGGGGTATGACACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGGGGACAGAGGCAGAGAATTGCTATTGCGCGAGCTCTCCTAAAGAATGCCCCAATCCTTATACTTGATGAGGCCACCAGTGCCCTAGATGCAGTCAGTGAGCGGTTGGTCCAGGAAGCTCTCAACCATTTGATGAAGGGGAGGACAACGCTAGTGATAGCTCACCGATTGAGCACAGTTCAAAATGCCCATCAAATTGCACTCTGCTCTGATGGGAGGATTGCAGAACTCGGAACGCACTATGAGTTATTGGCTAAGAAAGGCCAATATGCTTCATTGGTTGGCACACAAAGGCTTGCATTTGAATGA 2283 0.4319 MGFEGVFGGGVRMKGAKPGPESREELISQMIYEDTRQFSITSMGSSILHLASPTLFFPLKPTLPFSSPSPLLQLPPLSSSSLPLRSRTLFKTITTPLAYVTGPASDPIFSESDPKIDESDPRPENVQPPSVISWGLLWKHLMKHKWRLAVSAVTLICCTCCTLSMPIFSGQFFEVLIGARPEPLWRLLSKVGILYALEPLLTVIFVVNMNLIWEKVMSTLRAHIFGRILIQKVEFFDRYKVGELTGLLTSDLNSLKDIVSENISRDRGFRALSEASISSPVRSCWDDMHTFCFITATCSNSRHSDSHNFCFTVYKRSTLPVFKAHGLVQASISDCVAETFSAIRTVRSFGGEKRQMFTFANQVLSYQSSGIKLGIFKSANESLTRVAVYISLLALYIIGGSKVKAGELSVGTVASFIGYTFTLTFAVQGLVNTFGDLRGAFAAVERINSVFSGVQIDEALAYGLERELKQKELDNDNYKLFFSDNTSEKSQNKYLHYMSALKSSNSFFSLAWSGDVSLEDVYFSYPLRPDVEILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPAKGRITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDNVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHYELLAKKGQYASLVGTQRLAFE 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1118 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 755 IPR027417 -
Dere01g1118 760 Gene3D ABC transporter type 1, transmembrane domain 123 265 IPR036640 GO:0005524|GO:0016020
Dere01g1118 760 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 516 754 IPR003439 GO:0005524
Dere01g1118 760 CDD ABC_MTABC3_MDL1_MDL2 516 755 - -
Dere01g1118 760 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 439 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1118 760 SMART AAA_5 543 737 IPR003593 GO:0016887
Dere01g1118 760 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 514 758 - -
Dere01g1118 760 SUPERFAMILY ABC transporter transmembrane region 137 263 IPR036640 GO:0005524|GO:0016020
Dere01g1118 760 Gene3D - 514 757 IPR027417 -
Dere01g1118 760 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 109 758 IPR039421 -
Dere01g1118 760 Pfam ABC transporter transmembrane region 310 426 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1118 760 Pfam ABC transporter transmembrane region 150 264 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1118 760 Pfam ABC transporter 534 685 IPR003439 GO:0005524
Dere01g1118 760 Gene3D ABC transporter type 1, transmembrane domain 309 454 IPR036640 GO:0005524|GO:0016020
Dere01g1118 760 MobiDBLite consensus disorder prediction 104 126 - -
Dere01g1118 760 ProSitePatterns ABC transporters family signature. 657 671 IPR017871 GO:0005524|GO:0016887
Dere01g1118 760 SUPERFAMILY ABC transporter transmembrane region 311 451 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1118 Dere-ChrDere01 22574997 22594916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1118 513 760 Calmodulin-binding Proteins AT2G36910 54.183 4.21e-74 260