Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1111 ATGGCACCTTCTCGGGTGATTGGAGGATTAACCCAATCATCATCAAATTCTGGAATATTCTTTCAAGGGGATGGGCACTCACAGAATGTAGTTAATTCTCGCTTAAGCTCCTCTTTTGGTAACTCATCTAATTCGATTCCTGTAACTGGGCATTCAAATCTGGGTCCAGTTTCTGGGGACATGAACAATGCAAATTTAAACAGTGTGGCAAATTCAGGACCAAGTGTTGGAGCAAGTTCTTTAGTCACAGATGCAAACTCTGCACTCTCAGGAGGCCCTCATTTGCAGAGAAGTGCAAGCATTAACACAGACTCTTACTTACGGTTGCCTGCGTCACCCATGTCATTCTCATCAAATAATGTTAGTATTTCGGGTTCCTCAGTCATGGATGGTTCTTCTGTAGTACAGCCGAGCTCCCATCAAGATCAGGGTGTTCAACAATTGCAGCAGAACCAGCAGTCTCCAATGGGTGCTTCAGCTTCGGCATCCTTGCCTGCGGCTCAAGGTGGACCAACTTCTGTCCCAATGGGTGCACGAGTACCTGGTTCTTTTGTTCAGGATCCAAATAATTTATCCCAGCTACATAAGAAACCTCGTCTGGATATCAAGCAGGAAGATATACTGCAACAGCAGGTAATGCAACAGATTCTTCAGAGACAGGACCCCATGCAGTTCCAGGGTCGTAATCCACAAGTGCAAGCTTTGATTCAGCAGCAGAGATTAAGGCAACAACAGCAGCAGCAAATCCTTCAATCAATGCCACAGCTACAGCGAGCCCACTTACAACAGCAGCAGCAGCAACAACAACAACAGCTGCAACTGAGGCAGCAGTTACAGCAACAAGTAATGCAGCCCATGTCTTCCATGAAGCGTCCATATGACAGTGGGGTATGTGCCCGACGATTGATGCAATACCTGTATCACCAGAGGGAGCGACCAAATGATAATTGTATTGCATATTGGAGGAAATTTGTGGCTGAATATTACTCTCCGCGTGCAAAGAAACGGTGGTGCTTGTCATTGTATGATAACGTTGGGCATGCACTTGGTGTTTTTCCCCAAGCAGCTATGGATGCATGGCAGTGTGACATATGTCATTCTAAATCTGGAAGGGGATTTGAGGCAACTTTTGAAGTACTACCTAGACTGAATGAAATAAAATTTGGCAGTGGAGTGATCGATGAATTACTGTTTTTGGACTTGCCACGCGAATGTAGATTTCCTTCTGGTGTAATGATGTTAGAATATGGAAAAGCTGTTCAAGAGAGTGTGTATGAGCAGCTTCGTGTTATTCGTGAGGGTCAACTGCGTATCATATTTACGCAAGACTTGAAGATCTTAACTTGGGAATTTTGCGCAAGGCGCCATGAAGAACTTCTTCCTAGAAGGTTGGTTGCACCACAGGTCAACCAGTTGGTTCAGGTAGCACAGAAGTGTCAGAGTACAATTGCTGAAAGTGTATCCGATGGGATTTCTCAGCAGGATTTGCAGACAAATAGCAATATGGTGTTAACAGCTTGGCGTCAGCTTGCTAAGAGTTTGGAGTTGCAGTCGCTAAACGACTTGGGTTTCTCCAAAAGATATGTGAGATGTTTGCAGATATCTGAGGTTGTGAATAGCATGAAAGATCTGATGGATTTCTGCCAGGAGCACAAAATTGGGGCAATTGAGGGCTTGAAAACTTATCCTCGGCATGCAACTGTGGCCAAGCTCCAGATGCAAAAGATACAGGAGATAGAACAACTAGCAAGTGTTCAAGGTCTGCCAACTGACCGAAACACGCTTAATAAGCTGATGGCATTGCATCCTGGGTTGAACAACCAAATCAACAATAATCATAATATAGTTAGTCGTGGCGCTTTAAGTGGGTCAGCACAAGCTGCGTTGGCACTGACTAACTACCAGAATCTTCTCATGAGGCAAAACTCCATGAATTCAAATTCCAGCTCACTCCAGCGGGAAGCATCATCTTCCTTCAATAATTCATCTCGGAGTCCTCCTTCAACCTTGCAAGGTTCTGCTGCTGCTTTAATTCCGGGGTCCATGCAGAATTTACCTGTCAGCGGTCTCTCAAGTCCCCATTTATCCCAACAGCAGCAGCAGCAGCAAAACCAAATGCAACAACTTCAACAGCGCACATTAACTGCAAATAACCTACTTCAACAAGGCCATGCACAGGGCTCTGAAGGAAATCAAGCTCTGCAGCAGCAGATGTTCCAGCGACTGCTACAAGAGGTATCAAATCACAGTGGGGGAGGAATGCAACCCCAGACCCTTGCCGGACCCAATGCAAATGGGAGTAATCCAAAGAATGGGTTGAGTTTCGGAGGCAACACTCCATCAGTAAATGGAGGTATTGCCAATGTTTCAGGAAGCAACGGACCTGCCCCTAGCAGGGGCAACAGTTTCAAAGCTGCTTCAAACAGTAATTCTTCTGCAGCTGGGGGCAACAATGGATTCAACCAGAGGCCTCCTGATATGTCACAGCATCTGCATTTACAGGAAGATATGGTTCAGGATATCGGGCATGAGTTCACAGATAGTGGCTTCTTTAACAGTGATCTAGATGAGAGCATGGGCTATGGCTGGAAGGCATGA 2598 0.4565 MAPSRVIGGLTQSSSNSGIFFQGDGHSQNVVNSRLSSSFGNSSNSIPVTGHSNLGPVSGDMNNANLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTDSYLRLPASPMSFSSNNVSISGSSVMDGSSVVQPSSHQDQGVQQLQQNQQSPMGASASASLPAAQGGPTSVPMGARVPGSFVQDPNNLSQLHKKPRLDIKQEDILQQQVMQQILQRQDPMQFQGRNPQVQALIQQQRLRQQQQQQILQSMPQLQRAHLQQQQQQQQQQLQLRQQLQQQVMQPMSSMKRPYDSGVCARRLMQYLYHQRERPNDNCIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHALGVFPQAAMDAWQCDICHSKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDLPRECRFPSGVMMLEYGKAVQESVYEQLRVIREGQLRIIFTQDLKILTWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAESVSDGISQQDLQTNSNMVLTAWRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCQEHKIGAIEGLKTYPRHATVAKLQMQKIQEIEQLASVQGLPTDRNTLNKLMALHPGLNNQINNNHNIVSRGALSGSAQAALALTNYQNLLMRQNSMNSNSSSLQREASSSFNNSSRSPPSTLQGSAAALIPGSMQNLPVSGLSSPHLSQQQQQQQNQMQQLQQRTLTANNLLQQGHAQGSEGNQALQQQMFQRLLQEVSNHSGGGMQPQTLAGPNANGSNPKNGLSFGGNTPSVNGGIANVSGSNGPAPSRGNSFKAASNSNSSAAGGNNGFNQRPPDMSQHLHLQEDMVQDIGHEFTDSGFFNSDLDESMGYGWKA 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1111 865 Coils Coil 692 712 - -
Dere01g1111 865 PANTHER LIM DOMAIN-BINDING PROTEIN 42 851 IPR029005 -
Dere01g1111 865 MobiDBLite consensus disorder prediction 126 168 - -
Dere01g1111 865 Coils Coil 261 281 - -
Dere01g1111 865 MobiDBLite consensus disorder prediction 644 710 - -
Dere01g1111 865 MobiDBLite consensus disorder prediction 126 191 - -
Dere01g1111 865 Pfam LIM-domain binding protein 301 559 IPR029005 -
Dere01g1111 865 MobiDBLite consensus disorder prediction 748 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1111 Dere-ChrDere01 22412478 22420790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1111 289 566 C2H2 Transcription Factor Family AT1G43850 57.914 4.66e-109 353