Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1107 ATGGGCTTTCTCCGACGACTCTTCGGCGGCAAGAAAACCGATCATCTGTCCGCCTCCTCCGGCAAGGACAGGAAGAGATGGACCTTCGGCAAATCCAAGAAGGACAAGTCTAACGCTACTAGAAGTAGAGAATCTGGTCTCAGCCAGTTTGAATCCTCCACTCCATTCACTGATTCTTTAGATGCCAATAAGCATGCCATAGCTGTAGCGGCGGCGACGGCCGCCGTGGCTGAGGCCGCACTGGCCGCTGCCCATGCCGCTGCAGAAGTAGTCAGACTGACAAGTGGTGGCACCGTCACTCGACCGGCGACTGAGACGCAGGCTTCCGCGAGCCAACTCCGGTGGGCGGAGGAAGTCGCCGCCGTTAAAATACAGTCTGCTTTCCGGGCTTATCTGGCAAGGAGGGCACTACGAGCACTCAAATCGTTGGTGAAGCTGCAAGCACTTGTGAGGGGCCACATCGTAAGAAAGCAAACTGCAGACATGCTCAGGCGCATGCAAACATTGGTTCGACTGCAGGCCCGAGCACGTGCAAGTCGCGTGCACTTGTCTGATCGTCTGCATTCTAGCAAGTCTGCACTATTTTATCACCCTGTCCCTGAAGATCATGACCACACACTTCGTGCCTATAGTACGAAATATGATGGATCTTCCATCCTGAAGAGATGTAGCTCCAACGCAAATTTTAGGGACATTGGCCCAGAAAGAGAACAGTATGGATCACAATGGTTAGATCGTTGGATGGCAGAGAGTGTATGGAGCCACCCCAGAGATGCAGCTTCACTGAGAAATGAATACGCTGATGATGGGAAGAGTGACAAGATTCTCGAAGTGGACACTTGGAAGCCACACATGAGCTCTCACCGGAGTACCAGCTCCTTCCACGTGTCTCAATACTATGTACCTTCTCATTACAACAACAATGAGATGGCATATGATCAGTCTCCATCAAAAAGGTCATCGAAAGCTCTGAACCAGAGCCTTTCATCTCTGAGATCTTTGAAGTTTCAGAAGGGAAAAGAAGTATTAGCTGCTTCAACTACTGCTGAGAATAGCCCACAGACACTTTCTGCCTCGTCTGGTAGGAGAGGCCCTTTCACTCCCACAAGGAGTGAGTGTTCTTGGGGCTTCTTTGGGCATCCAAATTACATGGCCAACACTGAATCTTCAAAGGCTAAGGTTCGCTCACAGAGTGCTCCCAGGCAAAGGTTGGAGTTTGAGAGATATGGTTCCAGTGGGCTTTGGGATTCAGATAGGGATGGTAATTTCAGAGGGAGAGCCTTTCCAGCTTCAACTGGCTTTAACAGAGTTGGAAGTACCCATTTAAGATAG 1332 0.5045 MGFLRRLFGGKKTDHLSASSGKDRKRWTFGKSKKDKSNATRSRESGLSQFESSTPFTDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGGTVTRPATETQASASQLRWAEEVAAVKIQSAFRAYLARRALRALKSLVKLQALVRGHIVRKQTADMLRRMQTLVRLQARARASRVHLSDRLHSSKSALFYHPVPEDHDHTLRAYSTKYDGSSILKRCSSNANFRDIGPEREQYGSQWLDRWMAESVWSHPRDAASLRNEYADDGKSDKILEVDTWKPHMSSHRSTSSFHVSQYYVPSHYNNNEMAYDQSPSKRSSKALNQSLSSLRSLKFQKGKEVLAASTTAENSPQTLSASSGRRGPFTPTRSECSWGFFGHPNYMANTESSKAKVRSQSAPRQRLEFERYGSSGLWDSDRDGNFRGRAFPASTGFNRVGSTHLR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1107 443 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Dere01g1107 443 Pfam Protein of unknown function (DUF4005) 349 404 IPR025064 -
Dere01g1107 443 PANTHER IQ-DOMAIN 5-RELATED 20 414 - -
Dere01g1107 443 Gene3D - 116 168 - -
Dere01g1107 443 MobiDBLite consensus disorder prediction 13 50 - -
Dere01g1107 443 MobiDBLite consensus disorder prediction 344 367 - -
Dere01g1107 443 MobiDBLite consensus disorder prediction 13 41 - -
Dere01g1107 443 ProSiteProfiles IQ motif profile. 141 168 IPR000048 GO:0005515
Dere01g1107 443 SMART iq_5 116 138 IPR000048 GO:0005515
Dere01g1107 443 SMART iq_5 139 160 IPR000048 GO:0005515
Dere01g1107 443 Pfam IQ calmodulin-binding motif 141 158 IPR000048 GO:0005515
Dere01g1107 443 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Dere01g1107 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 162 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1107 Dere-ChrDere01 22390228 22393945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1107 1 406 IQD Protein Family AT5G62070 48.931 5.98e-65 212