Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1103 ATGGGCGTTGACAAGGAAGCACTTTTTTTAGTTCTGTCTATACTTGGGAAGAAGAAAAAGAAACCCCATTCGTCAGTTTTAGCTGAATCTGGTTTCAAAGTCAAAACAGCGATAGTGACTGGCAAATTCGATACAAAACCTGGAGAAGAAGACGAAGAAGCAGGTTTAATTAGGAGCAATAGTAGTAGTAACTACAGCTGTGGAAGTGCAAGAGTCGTGGCTGATATTTCTCCACACAATCTCTTTATACCCAGTGGTTCCATAGTTGAGCCACCTCTTCATTCCCCCCCTATTTTCACTAAGAAAATGGAGGGCCATGGTGACATGGGTCTTATTGGGGAATTCGAGCATAGTTTTATGGGGAGGATGAGGGATGAAGAGTATGAGAGTCGGTCCGGGAGCGATAATTTCGAAGGAGCATCAGGTGACGATCAGGATGGCGGTGATGCTCAACGTCAGAGAAGAAAGAAATATCATAGACACACTCCTCACCAGATTCAAGAGCTTGAAGCATTTTTTAAGGACTGTCCTCATCCTGACGAGAAGCAAAGGATGGAACTTAGTAAGACGCTGGGCTTGGAGAATAAACAGGTCAAGTTCTGGTTTCAAAATAGACGAACTCAAATGAAGACCCAACTGGAACGCCATGAGAATATAATTCTCAGGCAAGAAAATGACAAGCTCCGAGCAGAGAACAGTTTGATAAAAGAAGCCATAGCGAACCCCATGTGTAACAGATGTGGTGGCCCGGCCATACCAGGCCAAATTTCTTTTGATGAGCACCATCTCAGAACTGAAAATGCTCGGCTAAAGGATGAATTGAACCGAATATGTACCCTGGCGAACAAGTTTCTGGGGAAGCCACTCTCATCCTTGGTCAGTCCTATTGCTCTTCCGAACTCGAATTCTGGCCTTGAACTCGCCATTGGAAGGAGTGAGATCGGTGGTTCAAGTGCTCTAGGTACTGCCATGCCAATGAGACTTGACTTGGGAGAAGGCGTGCTGGGTACTCCTCCTGCAATGCCACAAATTAGATCACCGGCGGGAATGTTGGGAGGTGAAGTTCAGCTTGAGAGGTCTATGCTTATAGATCTTGCATTGTCTGCTATGGAGGAATTACTGAAGATGACTCAAGTAGGTAGCCCTCTCTGGATTAAGAGTTTGGATGATGGAAAAGAGGTACTGGACCTTGAAAAGTATGACAGGATGGTTACTCCTTGTGTTGGCCCTAAACCAATTGGTTTTGTAACGGAAGCTACAAGGGAAACTGGTATAGTCATCATAAATAGTCTAGCTCTCATGGAGACATTGATGGACGCGAATCGGTGGGCGGAGATGTTTCCATCCTTAATTGCTAGAGCTACAACCCTTGATATAATATCAAATGGAATGGGTGGAACAAGAAATGGTGCTTTGCAAGTGATGCATGCTGAAGTTCAATTGCTTTCACCGCTGGTCCCGGTGCGTCAACTGAGATTCCTTCGCTTCTGCAAGCAGCATGCAGACATATGGGCTGTAGTTGACGTTTCAGTAGACGTTGGTCATGATGCTACCAATGGCCACCCATTCGTGAGCTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAGGATATGCCCAATGGTTACTCTAAGGTTATTTGGGTTGAGCATTCACAGTATGATGGAAGTGTTGTCCACCAACTCTACCGCCCATTACTTGGCTCTGGCATCGGCTTTGGTGCTCAGAGGTGGATCGCCACCCTTCAAAGGCAATGTGAATGCTTAGCAATCCTCATGTCTTCTTCCATTCCTACCGAGGATCATACAGCCTTAAGCCAAGCTGGTAGGAGAAGCATGTTGAAGCTGGCACAACGCATGACCAACAACTTCTGTTCTGGGATTTGTTCATCATCTGCACGCAAGTGGGACACCCTTCATGTTGGTACTTTAGGTGATGACATGAAAATAATGACTCGGAAGAACGTGGATGACCCCGGTGAGCCTCCGGGGATCGTGCTTAGTGCTGCAACTTCTGTTTGGATCCCGGTGTCGCCGGAAAGGTTGTTCAATTTTCTGCGTGATGAACGGCTGAGAAGCGAGTGGGACATTTTGTCCAATGGTGGACCAATGCAAGAGATGGTCCATATTGCCAAAGGTCAAGGATCTGGAAATTGCGTTTCCCTCCTTCGTGCTAATGCTGTGAATGCAAACGATAGCAACATGGTAATTTTGCAGGAGACGTGGACTGACGCATTGTGCTCGGTGGTGGTGTATGCACCGGTGGACGTGCAATCCTTGAACGTGGTAATGAGCGGAGGAGATTCTGCATATGTTGCTCTCTTGCCTTCTGGTTTCGCCATTCTTCCTGATGGGCAAACCAAAGGCAACGAAGGTGGTGGAAGTCTACTCACAGTAGGGTTCCAGATTCTGGTGAACAGTATCCCAACGGCCAAGCTCACGGTGGAGTCAGTAGAGACAGTGGACAACCTCATCTCCTGCACCATTCTCAAGATCAAAACTGCTCTCGGAATTGCATGA 2517 0.4696 MGVDKEALFLVLSILGKKKKKPHSSVLAESGFKVKTAIVTGKFDTKPGEEDEEAGLIRSNSSSNYSCGSARVVADISPHNLFIPSGSIVEPPLHSPPIFTKKMEGHGDMGLIGEFEHSFMGRMRDEEYESRSGSDNFEGASGDDQDGGDAQRQRRKKYHRHTPHQIQELEAFFKDCPHPDEKQRMELSKTLGLENKQVKFWFQNRRTQMKTQLERHENIILRQENDKLRAENSLIKEAIANPMCNRCGGPAIPGQISFDEHHLRTENARLKDELNRICTLANKFLGKPLSSLVSPIALPNSNSGLELAIGRSEIGGSSALGTAMPMRLDLGEGVLGTPPAMPQIRSPAGMLGGEVQLERSMLIDLALSAMEELLKMTQVGSPLWIKSLDDGKEVLDLEKYDRMVTPCVGPKPIGFVTEATRETGIVIINSLALMETLMDANRWAEMFPSLIARATTLDIISNGMGGTRNGALQVMHAEVQLLSPLVPVRQLRFLRFCKQHADIWAVVDVSVDVGHDATNGHPFVSCRRLPSGCVVQDMPNGYSKVIWVEHSQYDGSVVHQLYRPLLGSGIGFGAQRWIATLQRQCECLAILMSSSIPTEDHTALSQAGRRSMLKLAQRMTNNFCSGICSSSARKWDTLHVGTLGDDMKIMTRKNVDDPGEPPGIVLSAATSVWIPVSPERLFNFLRDERLRSEWDILSNGGPMQEMVHIAKGQGSGNCVSLLRANAVNANDSNMVILQETWTDALCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGQTKGNEGGGSLLTVGFQILVNSIPTAKLTVESVETVDNLISCTILKIKTALGIA 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1103 838 ProSitePatterns 'Homeobox' domain signature. 187 210 IPR017970 GO:0000981|GO:0006355
Dere01g1103 838 MobiDBLite consensus disorder prediction 125 163 - -
Dere01g1103 838 SMART HOX_1 154 216 IPR001356 GO:0003677
Dere01g1103 838 Coils Coil 206 241 - -
Dere01g1103 838 FunFam Homeobox-leucine zipper protein HDG1 141 228 - -
Dere01g1103 838 Gene3D - 142 226 - -
Dere01g1103 838 Pfam Homeodomain 155 210 IPR001356 GO:0003677
Dere01g1103 838 CDD START_ArGLABRA2_like 359 586 - -
Dere01g1103 838 SMART START_1 364 587 IPR002913 GO:0008289
Dere01g1103 838 ProSiteProfiles START domain profile. 355 590 IPR002913 GO:0008289
Dere01g1103 838 SUPERFAMILY Homeodomain-like 140 212 IPR009057 -
Dere01g1103 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 153 835 IPR042160 -
Dere01g1103 838 Pfam START domain 365 587 IPR002913 GO:0008289
Dere01g1103 838 SUPERFAMILY Bet v1-like 607 816 - -
Dere01g1103 838 ProSiteProfiles 'Homeobox' domain profile. 152 212 IPR001356 GO:0003677
Dere01g1103 838 SUPERFAMILY Bet v1-like 357 587 - -
Dere01g1103 838 CDD homeodomain 155 212 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1103 Dere-ChrDere01 22334664 22339694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1103 68 835 Homeobox Transcription Factor Family AT3G61150 57.143 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere01g1103 START 3.2e-48 CL0209