Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1098 ATGATCAGAATCACAACGCTGTCGCACATCCTTGTCTTCCTGCTACTACCGTATGCCTCCAATGCCCAGTCAACTTCGCAAACTGTAGCTCCTCAAGCTTTTCGCCACAACCTGGAGCCATCATTCGCCGCCGTGGTTGTGGCCCTCGTTTGCGCCTTCTTGTTCGTGGGCTTCTTCTCCATCTACCTCCGCCATTGCTCCGACACCTATCTCGCCGTCGGAGTCCCGGCCGGCGCCAACATCAATTGCTCGTCCCGTAGTCCTCGAGGCATCGACCCGAAATTACTCGAAACCTTCCCCATCCTCGTCTATTCCACCGTTCAGCACCTCAAAATTGGAAGAGAAGCGCTGGAGTGTGCGGTGTGCTTGAGCGAGTTCAAGCACCACGACACGCTCCGATTGCTTCCCAAATGTGACCACGTGTTTCACCCTCACTGCATAGACGCCTGGTTAACCTCCCACGTGACTTGCCCCGTTTGTCGCGCGGAGCTAAAACCAGAGCCCCAGTGTGGTGAAAACGAAGTAGCCATCGTAATTACGAACGAGACAAATGCACACCAGGTGTTCGATGAAAGTTCTACGGGCAGAACCGAGCTTAATTCTGGAGAGGAGAGACATGAGAACGAAGGTGAGAGAAGAAGTTTGGGAAAGTGTCATTCAACGGGTCACTCTTTGGGTTTGGTTGAAGCAGGGAAGGACTTGGAGAGGTACACTCTGAGGTTGGCGGAGGATGTGAGGAGACAGATTATGGTGGATCATGGAGGAATTCGGCGTTCGGCGAGCTACGATGTGTTTTGGGGACGACAACGGAGTTTGAAGAAAGGTTATGGCCATAGGAATTGTGAAGGGGAAGGAAGCAGTAGAGGGCGGTTGGTTCTTTCAATGACACCTCCATTTGTTTCTCGCAGTCATGCGCTGACCACCTGCTCTTCAGTTCCAAGCCTGTGGGCTTCTTCCTCTTGTACACCCTCCTCACCCTGA 981 0.5301 MIRITTLSHILVFLLLPYASNAQSTSQTVAPQAFRHNLEPSFAAVVVALVCAFLFVGFFSIYLRHCSDTYLAVGVPAGANINCSSRSPRGIDPKLLETFPILVYSTVQHLKIGREALECAVCLSEFKHHDTLRLLPKCDHVFHPHCIDAWLTSHVTCPVCRAELKPEPQCGENEVAIVITNETNAHQVFDESSTGRTELNSGEERHENEGERRSLGKCHSTGHSLGLVEAGKDLERYTLRLAEDVRRQIMVDHGGIRRSASYDVFWGRQRSLKKGYGHRNCEGEGSSRGRLVLSMTPPFVSRSHALTTCSSVPSLWASSSCTPSSP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1098 326 CDD RING-H2_EL5-like 118 161 - -
Dere01g1098 326 Pfam Ring finger domain 118 161 IPR001841 -
Dere01g1098 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 253 - -
Dere01g1098 326 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Dere01g1098 326 MobiDBLite consensus disorder prediction 197 217 - -
Dere01g1098 326 SUPERFAMILY RING/U-box 114 167 - -
Dere01g1098 326 FunFam E3 ubiquitin-protein ligase ATL6 79 167 - -
Dere01g1098 326 SMART ring_2 119 160 IPR001841 -
Dere01g1098 326 MobiDBLite consensus disorder prediction 190 217 - -
Dere01g1098 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 169 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1098 Dere-ChrDere01 22254031 22255011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1098 11 304 Rapid Response to Elicitors AT3G05200 38.924 1.40e-58 192