Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1097 ATGATCCATAGCACACAAACACAATTCCACTTCAGCCCACTCACATGGGCTCAACTACTCTTCCTCGTCTTCCAACCACGCGCCGCCGCACAGTCCGCCGTACAACCAGTGCCTACCTTTGCTTCCCACCAAAACTGGGACCCCTCAATTGCTGCCATGGTGGGAGCCCTCTTCTGCGCCTTCCTGTTCGTGGGCTTCTTCTCCGTCTACCTCCACCATTGCTCCGACGTCCACATAGCAACCGCCGCCGCTGCAGGAGGCGAGTGGCGGTGCTCCTGTTCTGAGGGCATCGACCGGAAGGTCCTGGACACATTTCCCATCCTCGTCTATTCCACCATCAAGGACCACAAAATGGGAAAATTCGCGCTTGAATGTGCCGTATGCTTGAGCGAGTTCAAAGACTACGAGACCCTCCGATTGCTTCCCAAATGCAACCATGTCTTCCATCCTGATTGTATCCAAGCTTGGCTATCTTCCCACGTCACTTGTCCCGTTTGTCGAGAAAAGCTGAACCCAGATTTCGCTCAAGTGGCAATTACGCTTCCCAATGAGGCCAGAGACGAACATGACCGTACAGAACAGCACCAGAATCTTCAAGATCAGAGTAGTATGAACTCTGGGGAAGATGATACGGTGACCGTCCATGAAGCTCCGGTGAAATCGGGAAGGTTTGTAGAGTTAACGAGGTCGAATTCGACAGGTCATTGTGAGGTCGAAGGTGGTGGGAACGACAGGGAGAGGTACACGCTGAGGTTGCCGGAGGATGTTCGGAAGTATGTTCTGCTGAACCATGGGTCGATGCGGCGTTCGGCGAGCTACAACGTTATAACGCCCACTTGTCGTAATGAAAGCCAAGGCTTACAGAGAGATCACGTTTCTCCCACGGCATGA 891 0.532 MIHSTQTQFHFSPLTWAQLLFLVFQPRAAAQSAVQPVPTFASHQNWDPSIAAMVGALFCAFLFVGFFSVYLHHCSDVHIATAAAAGGEWRCSCSEGIDRKVLDTFPILVYSTIKDHKMGKFALECAVCLSEFKDYETLRLLPKCNHVFHPDCIQAWLSSHVTCPVCREKLNPDFAQVAITLPNEARDEHDRTEQHQNLQDQSSMNSGEDDTVTVHEAPVKSGRFVELTRSNSTGHCEVEGGGNDRERYTLRLPEDVRKYVLLNHGSMRRSASYNVITPTCRNESQGLQRDHVSPTA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1097 296 CDD RING-H2_EL5-like 124 167 - -
Dere01g1097 296 SUPERFAMILY RING/U-box 124 173 - -
Dere01g1097 296 MobiDBLite consensus disorder prediction 185 212 - -
Dere01g1097 296 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Dere01g1097 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 174 IPR013083 -
Dere01g1097 296 SMART ring_2 125 166 IPR001841 -
Dere01g1097 296 PANTHER RING FINGER DOMAIN-CONTAINING 35 170 - -
Dere01g1097 296 Pfam Ring finger domain 124 167 IPR001841 -
Dere01g1097 296 FunFam E3 ubiquitin-protein ligase ATL6 87 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1097 Dere-ChrDere01 22230124 22231014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1097 19 261 Rapid Response to Elicitors AT3G05200 41.107 3.78e-55 182