Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1094 ATGGAGAGTTTCTTCTTGGGTAAGACAACTGAAGGATCACAGAAGGAATCACTGATGGAGGAATTCATTCTTCAGAATCCTTCAGACATGATTCGAGAAGCAAGTGATCAAATTGAAGATCACCCAGGAGTACTAAAAGATGAAGTAAAAGACGAAGAGGAGGAATCAAGTGAAGAGCTAGAAGATCCTGAAGAGGATTCCATCGAAAAAGTGGAGCAAAAGCAGCTAGAAGAAACAATTCTTGACCCAGGGCATGATATGAAACTGGGGAAAGTATCATGTTATGAAGTTCCTGAATGTTTTTGGTTGCCATTCTATAATTGCAGAGATGACCAGTCTATAGAACCATTTGAGGAGCTATCAGCAGCATCATTGTTGGAGCAAACTTTTGATTGTGAGGAACCAGAAGTTGTTCCTGAAGTGAATGAGGAGGCATTAAAAATGTCTTTTTTAAAGCAAACTTCTGACCGTGATTCTGATGGGAGTGATCACCGATCTGGATCTGTTAAATCAAATGATAAGAAGAGGTGTCTGGATGTTGGATCTGGTGTATTTACTCCAATGCAATGTTATCAGTCAAAAAAGAAGTGCAAGCAAGGGGGATCTTCAGGTCCAAAATTAGAATCAGGACCTTCAGGTCTGGAGCTCAATAGTTACCTTGTAACAGCTGTGGCATCTATCGATAAATCTGCTTCTAAAGAAGGTACAGGAAGTTCCGGAAAACGAAGGCAAAGCAGATGGGAAACAGAGTCTGAGGGCAATGGCATCAAAGACTATCAGACTTGCAAGAGGAGGAAAACCAGGTGCTGCAGTGATGACGCTCAACTAAAATTGCTGGGGCCCCTTCAGCTGCCTGACTTCACAAAAGATTTTCTTCTTGGATGTGAGGAGGATCCAGAAATTCAGGCACTGAAAGCTGAGCTTTTTGAGATTAATAGAAAATTGCAAAAAGCTCTTCATGATGATAGGCTCAAGGAAGAAAGATCTGTTTCCCCAGAACCAATTTATGATGACGTTGGCGTCAGAATAAATACAAGGGAAGCAAGACTCTGTCAAAAACTTGTACAGAAACGTCAAAATATCATATCAAAATTGATTAAATCCAACCCAACTTTTAGCCTTCCCCCTGATTACAAGCCTACAAAGCTCTTTAGAAAACTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGCCCGCGAGGAAAGACACAGAAGAGAATGGAAATTGAAACTGGGGCTAAGATTCTTTTAAGAGGTAAAGGATCCTCTAAAACACCCAACAAATCTGCCTCTGCTAAAGAAGACTTACATGTCTATATAGAAGCAGACAATCAAAAATCACTGGATGCAGCAGTTGCCATGGTTGAGAAACTGCTAATCCCTATTGAAGGAAGAAATGAGCACAAGCAAGCCCAATTAAAGGAGCTGGCCATTCTGAATGGAACAGTAAGAGATGAAAATGTGTGCAATGTTTGTGGTGATGAGGGACACCGGCTGTATGCCTGCCCCGTCCTTCAATCAACTTTCAAATTGAATTCATGTGACACATGTTGTAATACTCATTTAAAACCTGCCTGTCCATTGGCTGTACGATCTCCACAGAATGACTCTGTGCAGGATTCTGGGTTTGGTTTGAGTTTTAGTTCATCACAGAATAGACAAAGGTGGCCTGAAAAAAAATTCCTGATAAATAATCTATATGTTGGCAATCTGTCTCCAGCAATTGATAATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCTCTGAAGCAAAAGTTATCAAGGATCGAACCACTGGAATTAGTAGAGGTTATGGTTTTGTCACTTTTGCGAATGCCATGGATGCCGGAATAGCTATAACTCATTTGAATGGCTTAAAACTGGATGGAAAGGTTTTGAAGGTAAGGATAGCTCGGCTCCTGTCAAATACTGAATCTCCAGGACTGCACGCTCTTCCCCAGCGCTCCGGGCCTGCACGCATATCCCAAAATGTCACAAGCCAAACAGATTGGTCTGGCCCATTTCATTTTATGCTGCCAGAACATCAAACTTCATTTCATGACAGCAACGGCATGAATCTGTTTTCATCCACTATTAACTCACAGCATGATGATCTTAAGAAGGATCAAGGCTTTACTCCTCCAAGCTACACCTCAAGCCCCTCTGATTTTAGTAATTCTAGCAATATGCATTTTTCATGCAACTTTTCGGATCAAAGTTTTTTCTCATCAGGTAATTCAATCACACCCACTCCTGGTTCACAATTTAAGTCACATTTTATGACACCGCCATTTCAAAAGGCTACACTGCTCAATCCTGATCACAGATCTGAGGAAGATATAAATTCCTTACCTCCTCCTTAG 2391 0.4082 MESFFLGKTTEGSQKESLMEEFILQNPSDMIREASDQIEDHPGVLKDEVKDEEEESSEELEDPEEDSIEKVEQKQLEETILDPGHDMKLGKVSCYEVPECFWLPFYNCRDDQSIEPFEELSAASLLEQTFDCEEPEVVPEVNEEALKMSFLKQTSDRDSDGSDHRSGSVKSNDKKRCLDVGSGVFTPMQCYQSKKKCKQGGSSGPKLESGPSGLELNSYLVTAVASIDKSASKEGTGSSGKRRQSRWETESEGNGIKDYQTCKRRKTRCCSDDAQLKLLGPLQLPDFTKDFLLGCEEDPEIQALKAELFEINRKLQKALHDDRLKEERSVSPEPIYDDVGVRINTREARLCQKLVQKRQNIISKLIKSNPTFSLPPDYKPTKLFRKLYIPVKEYPEYNFVGLIIGPRGKTQKRMEIETGAKILLRGKGSSKTPNKSASAKEDLHVYIEADNQKSLDAAVAMVEKLLIPIEGRNEHKQAQLKELAILNGTVRDENVCNVCGDEGHRLYACPVLQSTFKLNSCDTCCNTHLKPACPLAVRSPQNDSVQDSGFGLSFSSSQNRQRWPEKKFLINNLYVGNLSPAIDNNRLSELFSPFGKISEAKVIKDRTTGISRGYGFVTFANAMDAGIAITHLNGLKLDGKVLKVRIARLLSNTESPGLHALPQRSGPARISQNVTSQTDWSGPFHFMLPEHQTSFHDSNGMNLFSSTINSQHDDLKKDQGFTPPSYTSSPSDFSNSSNMHFSCNFSDQSFFSSGNSITPTPGSQFKSHFMTPPFQKATLLNPDHRSEEDINSLPPP 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1094 796 MobiDBLite consensus disorder prediction 51 66 - -
Dere01g1094 796 ProSiteProfiles Type-1 KH domain profile. 398 462 - -
Dere01g1094 796 Pfam KH domain 398 463 IPR004088 GO:0003723
Dere01g1094 796 Gene3D - 538 654 IPR012677 -
Dere01g1094 796 SMART kh_6 381 467 IPR004087 GO:0003676
Dere01g1094 796 CDD KH-I_BBP 382 467 - -
Dere01g1094 796 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 383 500 IPR036612 GO:0003723
Dere01g1094 796 MobiDBLite consensus disorder prediction 29 72 - -
Dere01g1094 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 571 649 IPR000504 GO:0003723
Dere01g1094 796 Gene3D - 295 375 IPR047086 -
Dere01g1094 796 SMART rrm1_1 572 645 IPR000504 GO:0003723
Dere01g1094 796 MobiDBLite consensus disorder prediction 776 796 - -
Dere01g1094 796 MobiDBLite consensus disorder prediction 235 253 - -
Dere01g1094 796 PANTHER RNA-BINDING PROTEIN RELATED 229 683 IPR045071 -
Dere01g1094 796 Gene3D K Homology domain, type 1 376 498 IPR036612 GO:0003723
Dere01g1094 796 Pfam Splicing factor 1 helix-hairpin domain 299 379 IPR032570 -
Dere01g1094 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 573 643 IPR000504 GO:0003723
Dere01g1094 796 SUPERFAMILY RNA-binding domain, RBD 554 651 IPR035979 GO:0003676
Dere01g1094 796 MobiDBLite consensus disorder prediction 152 174 - -
Dere01g1094 796 MobiDBLite consensus disorder prediction 230 253 - -
Dere01g1094 796 Coils Coil 301 321 - -
Dere01g1094 796 MobiDBLite consensus disorder prediction 712 733 - -
Dere01g1094 796 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1094 Dere-ChrDere01 22200052 22203314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1094 570 655 Eukaryotic Initiation Factors Gene Family AT4G34110 41.860 1.35e-09 59.7