Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1078 ATGGAAGCTACCACCCTCACTGGATTGCTGAAAAAGGTCTTCACAGAATTCCCCTCCCGCCGAGCCATCTCCGTTTCCGGAAAGTTCGATCTCACTTACTCTCGCCTTCACCACCTCGTCGAACATGCCGCTTCTCGCTTACTCTCTGCCGGAATCAACGCCGGCGATGTCGTTGCCCTCACCTTCCCCAATACCGTCGAGTTTGTTATATTGTTCTTGGCCGTAATTCGAGCTCGAGCCACCGCTGCGCCGCTGAACCCAGCCTACACAGTCGAAGAGTTTGAGTTCTATTTATCTGACTCAGAATCGAAGCTCTTACTAACGTCCCAGGAAGGAAACAAGGCGGCTCAAGCAGCGGCTTCTAAGCTGAACATCCCCCACGCCACGGCTTCGCTTGCCGCAAATGACGACGCTGGGCTTAATCTCTCGCTCAGTCAATCCAAGTCAGACGTCAATTCAGTTACCAAACTCGTCAATGACCCGACGGACGTCGCACTCTTCCTCCACACTTCCGGCACCACCAGCCGCCCCAAGGGGGTGCCGCTGACTCAACTCAACTTAGTTTCTTCAGTAAACAACATAAAATCGGTATACAAACTCACCGAATCTGACTCGACAGTGATCGTTCTTCCGCTGTTCCACGTTCACGGACTCATCGCCGGGTTAATGAGTTCGCTCGGAGCGGGTGCCGACGTGGTGCTCCCCGCGGCGGGTCGTTTCTCGGCTTCCACATTTTGGTCAGACATGGTGAAGTACAACGCCACCTGGTACACGGCGGTTCCTACCATACACCAGATCGTGTTGGATCGCCATCTCAACAACCCGGAACCCGTTTACCCGAAACTCCGGTTCATCCGGAGCTGTAGCGCGTCACTCGCACCGGCAATACTGGCTCGGATGGAGGAGGCGTTCGGAGCTCCGGTGTTGGAGGCGTACGCGATGACGGAAGCGACCCATCTGATGTCGTCCAACCCGTTGCCGGAGGATGGGCCCCACAAGCCGGGGTCGGTGGGGAAACCGGTGGGTCAAGAGATGGCTATACTGGACGAGAAGGGTGAAGTGCAGAAGGCTGAAGTGAGTGGAGAGGTATGTGTGAGAGGATCGAACGTGACGAAAGGGTACAAGAACAATCTAGAAGCTAACAAGGCAGCGTTTCAGTTCGGTTGGTTTCACACGGGTGATCTCGGGTTTTTTGATTCCGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAGCTCATTAATCGCGGAGGGGAGAAAATATCACCAATTGAAGTGGATGCAGTCCTTTTATCTCACCCGGACATCGTGCAAGCAGTTGCTTTCGGAGTACCAGATGTCAAATACGGCGAAGAGATAAACTGTGCAATCATCCCTAGAGAAGGATCAAAGATTGATGAAGAAGAAGTGCTAAGGTTTTCCAAGAAGAATCTTGCAGCCTTCAAAGTGCCCAAAAAGGTTTACATCACTGATTCTCTGCCGAAGACAGCAACAGGCAAGATTCTACGACGTCTTGTAGCAGAACACTTCTCTTCTGCAATTTGA 1545 0.5275 MEATTLTGLLKKVFTEFPSRRAISVSGKFDLTYSRLHHLVEHAASRLLSAGINAGDVVALTFPNTVEFVILFLAVIRARATAAPLNPAYTVEEFEFYLSDSESKLLLTSQEGNKAAQAAASKLNIPHATASLAANDDAGLNLSLSQSKSDVNSVTKLVNDPTDVALFLHTSGTTSRPKGVPLTQLNLVSSVNNIKSVYKLTESDSTVIVLPLFHVHGLIAGLMSSLGAGADVVLPAAGRFSASTFWSDMVKYNATWYTAVPTIHQIVLDRHLNNPEPVYPKLRFIRSCSASLAPAILARMEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGKPVGQEMAILDEKGEVQKAEVSGEVCVRGSNVTKGYKNNLEANKAAFQFGWFHTGDLGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIVQAVAFGVPDVKYGEEINCAIIPREGSKIDEEEVLRFSKKNLAAFKVPKKVYITDSLPKTATGKILRRLVAEHFSSAI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1078 514 CDD FACL_fum10p_like 18 508 IPR045310 GO:0016874
Dere01g1078 514 FunFam 4-coumarate--CoA ligase 2 412 513 - -
Dere01g1078 514 FunFam Peroxisomal-coenzyme A synthetase 5 409 - -
Dere01g1078 514 Gene3D - 1 409 IPR042099 -
Dere01g1078 514 Pfam AMP-binding enzyme 15 416 IPR000873 -
Dere01g1078 514 SUPERFAMILY Acetyl-CoA synthetase-like 4 512 - -
Dere01g1078 514 PANTHER ACYL-COA SYNTHETASE 5 511 - -
Dere01g1078 514 Gene3D - 410 512 IPR045851 -
Dere01g1078 514 ProSitePatterns Putative AMP-binding domain signature. 167 178 IPR020845 -
Dere01g1078 514 Pfam AMP-binding enzyme C-terminal domain 425 500 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1078 Dere-ChrDere01 21928256 21932743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1078 4 514 Monolignol Biosynthesis Gene Families AT4G05160 30.550 2.61e-60 206