Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1054 ATGCCAGTTACCAAACTTACACCCTCTAGCACTTCAGATGTCATGAAAACAGAGGTTGGAAATGATTCCTTAGATACCATAATCAGACAAGCAATTGGCAAAGAACCTTTCCTTTCTTTTTCAAAGGCTGGCGACAGTCCTGTGCAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTCCCAGGTTGGCCAATGCTTACTCCTCTGAAGGTTCAATTGCAAAAGTGTGACAAGTGTTCCCGAGAATATTGCTCTGCAATTAACTATAGAAGACATCTTCGTGTGCAACATCGGTTGAAAAAGCTTGATAAGGATTCTACAAACAAAAGAGACCTGTTAGGAGCGTATTGGGATAAGCTCTCTCTAGAAGAGGCAAAGGAAGTTGTATCATTCAAGGATGTGATGCTGGAGGAAGTTCCAGGGTTTTCAATTTTAAAAGCGCTTGCAACCCTTGTTCGAAAACAAGGATTTTCTTCATTTCTGCAGTATTATCTGAAGGCTGGTTCTGCCCTTTTGGATATTGTTCAAGCTAGATATGGTTTTCCTATATCATCCCAGGAGTTGTTCAGTGTACTTGATGATGCCAGTGAAAAAACATTTTTGTGTGGAACTGCTGTGTCAATGAAGAAATATGTTTTTGATGGAGAAGCTGGAAAGATTGGTCTTGAACCAAAAAATGTCATTGCTTGCACAAGTTTCTTGCTAGAACAGATATTGGTGAAAGCATGGCTTGCTGACAAAGATGCTGAAGCGTTAAGGTGCCAGAAGCTATTGGTCGAGGAAGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACAGAGGGCAAGGTTGCAAAGGCATGAGGACGAGGCAGAAGTTAAAGAGAACATCAGTAGCACAGTAGAGGCTGTATCACTAGCCGAAGCATCTTTGGATACATTTGACTTGGAAGAACAAAATGCAGATGCTTTTACTGATCATATACGTTTGCAAGTTGTACCCTTTCAAGGCCCAAACACCAATGAAGGTTTAAATCAGAATTCTCAGTCAGGCTATGATTGTGGCAGTGATCAGATCATTGAGCAACGGACAGCACAAGGACATAAGCATGGACATGTACTGGTTGCTCAACGGGTACTGTCAAAATCACAAATGACTGTAGTCAATGGTCTTCATGCAAACAAGAATTCTCAAATGCTGAAGCTTGGGGTTGTTAAGAGAAATGGAACCTACCGTGACCAAAGAGCAGCTCCAGTAGTTAATGGTAACAAAGTATGGAGCCCAAAGCCTAAACCAGAAATTGATGGGATAATTTTGAAAGCCAGGCCACAGAAAGAGCCAGACGAAGTTAAGAACCAAGAAGTTTTGATAGGGTCTATATCTGTTGCTCTTGATAATTGCAATCAATCTAAAAACTGTTTGGTGGCTCCTCGAGCAGACTCCATGGTTGAGAATCTGACCAAGGAGAGTAGTGCTCAGGAGAAGCCAACAGTCCAGAGTGGCAACGACCGGTTAGCAGTCAAGCTTTGGAGGCCAGTTAGCTGGCGCGGATCAGAAGATACAATGCCAGTTCAAAATGGTGGTAGAGAAGCTGATTTGGACTCAATCAATAGAAAGGGAGATGATCAAAACTTGTCAGATGAAGGTTGTCTAAGGTGGTGTGATGTAGATAATGGTGATAATGGTTTTGAGAAGCATACCTTTCTTCCAGAGGACTGCGTAGGTCCAGGAGGCTTACGATTATCCAGCCATGCTGCAAAAGCCTTTCTGGCACAAAGATGGAAAGAAGCCGTATCATTAAACCATGTAACTTTGGTTCTTTCACCTGACTCCTGCCCTCCTGGGTATCTGGAGATACAGGATTGTGAACTGGCAACATGTCAATCTTCCAATGTTGACAGTCGCAGCATCCATGCAAGTGCAGAGATGTCTGCAACCTCGGAAGCTGCTAAATCCAAATTTAGGATGAAGCCTGAAAAGGGTATCAAGATCAAGTATATTCCCAAACAAAAAACAGCTGCCTATTAG 2052 0.425 MPVTKLTPSSTSDVMKTEVGNDSLDTIIRQAIGKEPFLSFSKAGDSPVQWIQLLHALDQQELPGWPMLTPLKVQLQKCDKCSREYCSAINYRRHLRVQHRLKKLDKDSTNKRDLLGAYWDKLSLEEAKEVVSFKDVMLEEVPGFSILKALATLVRKQGFSSFLQYYLKAGSALLDIVQARYGFPISSQELFSVLDDASEKTFLCGTAVSMKKYVFDGEAGKIGLEPKNVIACTSFLLEQILVKAWLADKDAEALRCQKLLVEEEEAAQKRQAEILERKRQKKLRQKEQRARLQRHEDEAEVKENISSTVEAVSLAEASLDTFDLEEQNADAFTDHIRLQVVPFQGPNTNEGLNQNSQSGYDCGSDQIIEQRTAQGHKHGHVLVAQRVLSKSQMTVVNGLHANKNSQMLKLGVVKRNGTYRDQRAAPVVNGNKVWSPKPKPEIDGIILKARPQKEPDEVKNQEVLIGSISVALDNCNQSKNCLVAPRADSMVENLTKESSAQEKPTVQSGNDRLAVKLWRPVSWRGSEDTMPVQNGGREADLDSINRKGDDQNLSDEGCLRWCDVDNGDNGFEKHTFLPEDCVGPGGLRLSSHAAKAFLAQRWKEAVSLNHVTLVLSPDSCPPGYLEIQDCELATCQSSNVDSRSIHASAEMSATSEAAKSKFRMKPEKGIKIKYIPKQKTAAY 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1054 683 Coils Coil 265 305 - -
Dere01g1054 683 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
Dere01g1054 683 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 681 - -
Dere01g1054 683 MobiDBLite consensus disorder prediction 525 548 - -
Dere01g1054 683 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1054 Dere-ChrDere01 21563131 21570858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1054 20 679 C2H2 Transcription Factor Family AT4G25610 43.407 3.58e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g1054 None None None