Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1052 ATGGGAAGCATTGAAGGGGTTGAAGGAGAGCTCGTGGAGGATGCGGGAGTGGAAGAGACTATCTATGTTGCAGTGGGGAAGAATCTAGAGAAGAGCAAACAACTTCTGCTGTGGGCAGTGCATAATTGTGCCGAAAAGAAGATATGCGTGCTTCATGTTCACCGGTCTGAGCGTGTTAATTCTTTGACAGACAGAAAACTCTATGGGAATGAACCAGCTGACCATAGAATAAATGAATTCCAGAAACAGGAGAGAGAAAAAGTGCATGAACTTTTGGACCAATACGTTCTCACTCTAGCCCTGGCAGGGGTACAGGCCAATAAAATGTTGATTGAAATGGACAGTGTTGAGAAAGGGATTGTACATGCTATTGCTCAGCACAATATAAGATGGCTTGTCATGGGAGCAGCAGCAGATAGATATCACTCAGGTAAATTGGCAGAAGAAGAGTCTGAGAAAGCTATTCTTGTACTTGAGCAAGCATCAGTGTCCTGTAATATTTGGTTCATTTACAAGGGCAATCTCATATGTACTAGCACAGATAGAAAACATACATCTGAAATAAAGACTGCCCCATCATTGTTGGTGCTCAGTTCAAATACAGGAGGTAAACAATCCGAGAAGTTCAGTTCTGAATGTATCCCAGATGCTGAAAATATGGAAGGAATCGTCAGAAATTTCAGTTCCCGCTGTTCCATAGAATCATTAAAGTCAAATAGATCTGTCTATAGAGTTATTGCCAGGTCAAAGTTAAGAGATTTGATGTCTCATGAGGAAAGAGATGGGCATGATGATGCAATTGAAATAAGACTGGAACAAGCCAACATAGATGCTAAGAATTTCAGACTAAAAGAACCTGTAGGGGCAGTGAAGAGATGCAATGTAGAAGGCAATAGTACTATGGAGGCTGAAGCATTAGAAAGCTTGTGTGCTGATGAGATGAATAGAAGAAGAGAACTTGAAGAATTATTGGCTAGGGAAAAGCAAGAATTACAGGAACTGAAGAATCAACAAGATGAAAACACGTGCAAACTGCAAATGATCCAGGATCAAAATTCAGCACTTAACTGCCAAGTTGTTGAGTCCCAGACCATGGTGACAGAGTTGGAGGAGAAAATCATATCAGCAGTGGGACTCTTGAAAAGTTTTAGGGAAAAGCGAGATGAGTTAAAGGTAGAGCATGCAAATGCAGTAAGGGAAGTCAGCAAGCTAAGGAAGTTTGTAAACACAGATGCTCAATACTCTTATGGGACAGAATTTCCTACATTTTCTTTTATAGAGATTAATGAGGCAACTAATGATTTTGACCCATCTTGGAAGATTGCGGAGGGAAGGTATGGAAGTGTTTACAAAGGACTGCTTCGCAATATGCAAGTTGCCATAAAGATGTTGCCCTCTTATGGCTGTCAAAGCCAAATGGAGTTCCAACATCAGGTAGAGGTTTTGAGTAGGGTAAGACATCCAAACCTTTTAACACTTATTGGAAGCTGTCCAGAATCTAGGTCACTTGTTTATGATCACATTAATAATGGTAGCCTTGAAAACTACCTTGCACTCAAAGACAAGACTCCACTTCCTTGGCAAATTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTTATCTTCCTTCACTCTAGCAAGCCTTGTATAATCCATGGGAATTTGAAGCCAAGTAAAGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTTACTTGGGCATTTCTTCTTTGGTCCCACACAGTGCGCATTCAATTGACAGTAACACAATAGGTAACAACCCACATGAAAGTATGGTCTATGTGGATCCAGAATATCTTGTCACTGGGAAGCTTGCACCAGAGTCCGATGTGTATTCATTTGGAATCATATTGTTACAACTTTTAACTGATAGACCACTTTCGGGGATAGTGAGGGATGTGAAATGCGCATTGGAGAAGGAAAACCTTAAAGCAGTTTTGGACTTTTCAGCTGGAGAATGGCCACTTGATCAAGCTGAACAGCTGGCATGCACAGCAGTGAGGTGTTCTGAGAAGACTTGGTTGAACCGTCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAGCCATTACGAACTTCATGCAGTAACTTGCCACCATATTTGATTTCTAAGAAGCTTCATCGTGTTCCTTCCCATTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCCTACATAGCTGCAGATGGCTTTACATATGAAGCAGATGCAATAAGAGGATGGTTGGATAGTGGGCACAACACTTCCCCAATGACGAACCTTCAGCTTGAGCACACGGACCTGGTGCCTAATTATGCACTACATAATGCGATTCAGGAGTGGCAGCAACTACGGTGA 2367 0.4183 MGSIEGVEGELVEDAGVEETIYVAVGKNLEKSKQLLLWAVHNCAEKKICVLHVHRSERVNSLTDRKLYGNEPADHRINEFQKQEREKVHELLDQYVLTLALAGVQANKMLIEMDSVEKGIVHAIAQHNIRWLVMGAAADRYHSGKLAEEESEKAILVLEQASVSCNIWFIYKGNLICTSTDRKHTSEIKTAPSLLVLSSNTGGKQSEKFSSECIPDAENMEGIVRNFSSRCSIESLKSNRSVYRVIARSKLRDLMSHEERDGHDDAIEIRLEQANIDAKNFRLKEPVGAVKRCNVEGNSTMEAEALESLCADEMNRRRELEELLAREKQELQELKNQQDENTCKLQMIQDQNSALNCQVVESQTMVTELEEKIISAVGLLKSFREKRDELKVEHANAVREVSKLRKFVNTDAQYSYGTEFPTFSFIEINEATNDFDPSWKIAEGRYGSVYKGLLRNMQVAIKMLPSYGCQSQMEFQHQVEVLSRVRHPNLLTLIGSCPESRSLVYDHINNGSLENYLALKDKTPLPWQIRISIAADICSALIFLHSSKPCIIHGNLKPSKVLLDANFVAKLGYLGISSLVPHSAHSIDSNTIGNNPHESMVYVDPEYLVTGKLAPESDVYSFGIILLQLLTDRPLSGIVRDVKCALEKENLKAVLDFSAGEWPLDQAEQLACTAVRCSEKTWLNRPDLVSEIWSVLEPLRTSCSNLPPYLISKKLHRVPSHFVCPIFQEVMKDPYIAADGFTYEADAIRGWLDSGHNTSPMTNLQLEHTDLVPNYALHNAIQEWQQLR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1052 788 CDD RING-Ubox_WDSUB1-like 719 774 - -
Dere01g1052 788 SUPERFAMILY RING/U-box 715 786 - -
Dere01g1052 788 Gene3D HUPs 13 138 IPR014729 -
Dere01g1052 788 PANTHER OS02G0152300 PROTEIN 20 783 - -
Dere01g1052 788 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 137 - -
Dere01g1052 788 SMART Ubox_2 721 784 IPR003613 GO:0004842|GO:0016567
Dere01g1052 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 788 IPR013083 -
Dere01g1052 788 Coils Coil 303 351 - -
Dere01g1052 788 Gene3D Transferase(Phosphotransferase) domain 1 508 706 - -
Dere01g1052 788 ProSiteProfiles U-box domain profile. 717 788 IPR003613 GO:0004842|GO:0016567
Dere01g1052 788 Gene3D Phosphorylase Kinase; domain 1 406 507 - -
Dere01g1052 788 SUPERFAMILY Protein kinase-like (PK-like) 412 701 IPR011009 -
Dere01g1052 788 Pfam U-box domain 718 785 IPR003613 GO:0004842|GO:0016567
Dere01g1052 788 Coils Coil 380 400 - -
Dere01g1052 788 ProSiteProfiles Protein kinase domain profile. 435 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1052 788 Pfam Protein tyrosine and serine/threonine kinase 440 686 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1052 Dere-ChrDere01 21549124 21557949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1052 17 786 U-box Gene Family AT2G45910 41.884 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dere01g1052 PK_Tyr_Ser-Thr 2.3e-31 CL0016