Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1050 ATGCCCAGAGTATTAGGGAAAGAGGCCTTGAGCTATGCTTTTAGAGGAAGAGTTGGGCTTCTGAGGACTGCAGTAGTAATTAAACGACTGGACAAGGAAGACAAGGAGTCTGTGAAGGCGTTTTGTACTGACCCAGAGGAGGGGAGAAAGAAAGGTGTAAACGGTAATCCACCATTGCCTTGGTCTGTGAGGTATAAAGTTGCAATTGGGATTACAAAAGCCGTGGCATATTTGCATAACGGAATGAATAAATGTGTTGTTCACCGAGGCATTAAGCCCTCAAACATTCTTCTTTCCTCTAAAAAGGCTCCCAAGGTTAGATACTTCCAGGCTGATTTGATTTAG 345 0.4377 MPRVLGKEALSYAFRGRVGLLRTAVVIKRLDKEDKESVKAFCTDPEEGRKKGVNGNPPLPWSVRYKVAIGITKAVAYLHNGMNKCVVHRGIKPSNILLSSKKAPKVRYFQADLI 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1050 114 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1050 114 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 58 109 - -
Dere01g1050 114 Gene3D Transferase(Phosphotransferase) domain 1 46 111 - -
Dere01g1050 114 SUPERFAMILY Protein kinase-like (PK-like) 4 106 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1050 Dere-ChrDere01 21524462 21525619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1050 57 109 Receptor kinase-like Gene Family AT3G28040 47.170 3.69e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere01g1050 None None None