Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1030 ATGGTGTCCAAAAACCCCAACCCCTCAGATGCATTCTTCTTGGATCCCTGCGGCATGGCACTTCCTGAGCTCAGTCCCTTCGCCTCCGCCACCAATTCCTCCGACGACTCCACCAAGAAGGTCCGTAAACCATACACTATTACCAAGTCTAGGGAGAGCTGGACTGAACCCGAGCACGACAAATTCCTCGAGGCCCTTCAACTCTTTGATCGTGACTGGAAAAAGATAGAAGCATTTGTTGGATCTAAGACTGTTATACAGATACGTAGCCATGCACAGAAATACTTTCTCAAAGTTCAGAAGAGTGGGGCTAGTGAACATCTACCTCCAGCAAGGCCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAAATGCTCCAGTGGTCTCACAAGTATCAGGATCCTTTCAATCTTCACCAGCTTTGCTCGAACCTGGATATATCCTAAAGCCTGATTCCTCAGCAATGCTGAAAACTCCTATTATTAACACTGCAGTGTCTTCCTGGTCAAACAACACCGTGCAAACTGCCAATGTATTGCATGGGCCAAGAGTAAATAATTGTTGTAGTATCAGTGAAAGCACTCCCAGAGCACCGCCTGTTTGTGAAACTACTGATCAAGGGTACAATGGGCATCCACTTAGAGTTCTTCCGGATTTTGCACAAGTATACAGCTTTATTGGTAGTGTGTTTGACCCAAATGCTGCTGGGCATCTACAGAAACTAAAACGAATGGACCCTATTGACATTGAGACGGTGCTATTGTTGATTAGGAACTTGTCTATCAATCTAACTAGCCCAGATTTTGAGGATCATAGAAGGGTGATTTCATCCTATGAGGCAGAATTGGAGACATATAGCTACATCAATGCAGATAGACCCATGCACGACGATGAGCAGTTAAAGTGTTAG 921 0.4473 MVSKNPNPSDAFFLDPCGMALPELSPFASATNSSDDSTKKVRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPARPKRKAAHPYPQKASKNAPVVSQVSGSFQSSPALLEPGYILKPDSSAMLKTPIINTAVSSWSNNTVQTANVLHGPRVNNCCSISESTPRAPPVCETTDQGYNGHPLRVLPDFAQVYSFIGSVFDPNAAGHLQKLKRMDPIDIETVLLLIRNLSINLTSPDFEDHRRVISSYEAELETYSYINADRPMHDDEQLKC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1030 306 CDD SANT 53 96 IPR001005 -
Dere01g1030 306 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Dere01g1030 306 FunFam protein REVEILLE 6 isoform X1 53 101 - -
Dere01g1030 306 MobiDBLite consensus disorder prediction 103 133 - -
Dere01g1030 306 ProSiteProfiles Myb-like domain profile. 46 96 IPR001005 -
Dere01g1030 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 100 IPR017930 -
Dere01g1030 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 98 IPR006447 GO:0003677
Dere01g1030 306 Gene3D - 54 101 - -
Dere01g1030 306 PANTHER SWI/SNF COMPLEX-RELATED 31 268 - -
Dere01g1030 306 SMART sant 50 98 IPR001005 -
Dere01g1030 306 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Dere01g1030 306 ProSiteProfiles SANT domain profile. 49 100 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1030 Dere-ChrDere01 21247644 21255354 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g1030 Myb_DNA-binding 3.7e-10 CL0123