Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1008 ATGGGGAGAGGCAGGGTTGAGCTGAGGCGAATCGAGAACAAGATCAGCCGTCAAGTGACGTTTTCCAAGAGGCGAAATGGACTGTTCAAGAAAGCTCAGGAAATCTCTGTGCTGTGTGATGCTCAGGTGGCTTTGATCATCTTCTCCACCAAAGGCAAGCTTTTTGAGTACTCCTCTGATCCCAGCATTGATTGCATCCTGGAAAGATACGAGAGACAAGCGCACACAGAACAATTGGCTGAAGTTAACAATGAATCACAGGCAAACTTGTCCTTGGAATTCTACAAGCTTACCACTAAGGCTGAAGTCTTAGAGAAGCACATAAGGAACTATGGAGGACATGATCTGGATATCTTGAGTTTGAGAGAGCTTCAGAACTTGGAGCAACAGATTGAAACAGCTCTAAAGCGTATCCGAAACAGAAAGAACCAACTTATGAATGAATCCGTCTCGGAGCTGCAGAAAAGGGGAAGGGCATTGCAGGAGCAAAACAACATGCTAACAAAGAAGGTAGAATTCACATATGCAACTTATAATATTAAGGAGAAAGAGAAGACACTGAATGAAAATCCACACAAAGGGCCGGAAACCCCAGGACAAAATTTATCATGCTTCCAGAAACCTGCACCACAGCTTCAAGCACCACCAGTACAAGCTCCAACTCTAACTCTGGGAGGATCGGAAGAGGAAGAAAGGGTTGAAACTGAAACTGCACCAAGTAGAACTATTATCATGCCACCATGGATGCTACGTCATTTGATTAGGTAG 768 0.444 MGRGRVELRRIENKISRQVTFSKRRNGLFKKAQEISVLCDAQVALIIFSTKGKLFEYSSDPSIDCILERYERQAHTEQLAEVNNESQANLSLEFYKLTTKAEVLEKHIRNYGGHDLDILSLRELQNLEQQIETALKRIRNRKNQLMNESVSELQKRGRALQEQNNMLTKKVEFTYATYNIKEKEKTLNENPHKGPETPGQNLSCFQKPAPQLQAPPVQAPTLTLGGSEEEERVETETAPSRTIIMPPWMLRHLIR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1008 255 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere01g1008 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere01g1008 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere01g1008 255 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Dere01g1008 255 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Dere01g1008 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere01g1008 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere01g1008 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere01g1008 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere01g1008 255 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere01g1008 255 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Dere01g1008 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Dere01g1008 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere01g1008 255 Coils Coil 121 170 - -
Dere01g1008 255 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Dere01g1008 255 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1008 Dere-ChrDere01 20937380 20954088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1008 1 231 MADS-box Gene Family AT1G26310 52.675 6.29e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere01g1008 K-box 4.3e-22 No_clan