Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0950 ATGGAGCAGAAGCACGTTTTATTGTCAGCATTGAGTGTAGGGGTTGGTTTCGGAGTAGGGCTTGGATTGACTTCAGGGCAGGTTGTTCAGAAATGGGTTGGAGGGAATCGCGAGTCTGGTGAGCTCTCTGGTGAGCAGCTTGAGCACGAGCTCTTGAGCCAGGTGGTTGATGGCAAGGACAGCAAAATCACATTTGAAGAGTTTCCTTATTACTTAAGTGAAAAAACTCAAGTATTATTGACAACTACTGCATTTGTTCATTTAAAACAACTTCACTTTTCCAAGCACACTCGGAACCTTTCACCGGCAAGCACAGGAATTCTGCTTTCTGGACATGCAGAACTTTACCAACAAAAGCTTGCAACGGCTTTAGCACATCACTTTGAATCAAAGTTGCTGCTGCTAGATACTATTGACTTCTCTTTCAAGATGCAGAGCAAATATGGTTGTGCAAGAAAAGCATCATCATTTAAAAGGTCCTTATCTGAGGTGACTTTGGAGCATGTGTCCAGTTTGTTTGGTTCCTTTTCAATCCTCCCTTCAACTGGCGAAACTAGAGGCACGTTACATAGACATGTTAATAATACTCCTTCAAAGCTTTGTAGGAATGCCTCTACTGCATCTGATATGAGTAGCAATGCTTCCCAATGTGGTGCAACAAATTCAGCTCCCTTGAAGCACACAAGCAGCTTGTGTGTTGATGAAAAACTCTTTATTCAGTCGCTTTACAAGGTCTTGGTTTCTATCTCAGAAAGAAGTTCCATCATTTTATACATCAGGGATGTTGAGAAGATCTTTCTCCAATCACATCGGTTATACAATTTGTTTCACAAGATGCTGGAGAAACTTTCAGGGCCAGTGTTGATACTCGGTTCCCAGATATTGGATGGTGGAGAAGATGATTGCGCAGAAGTTGATGAAAGGCTCACCAAGTTATTCCCTGATAATATTGTCATCAAACCACCTAAAGATGAGATTAATCTAGAAAACTGGGGAGCCCAACTGAAAGAAGCCGTGAAAATGATCCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTACTTGCAGCAAATGATATTGAGTGTGATGACTTAAAATCTCACTTAAAATTAATCTGCCATGAAGACACAACAATACTAAGTAAACATATTGAAGAGATTGTGGTATTTGCTATATCTTACCACTTGATGAATACCCAGGATCCAGAATACCGAAATGGAAAGCTAGTAATATCATTCACGAGTTTGTCCCAAGGCTTGAGTCTATTCCAGGAAGGCAAAAGTAGTGTGGAGGATACTCTGAAGCTGGAGGCTAATGGAAACAAGGACTCTGCTGGAGGAGAGTGTAGTGGTGCAAAAAATGAGGAAGTTCCTCCTGACAATGAGTTTGAGAAGCGCATAAGATCAGAGGTCATCCCCGCAAATGAGATAGGAGTTACATTTGCAGATATTGGTGCATTAGACAAAATTAAGGAATCACTTCAAGAGCTGGTCATGCTTCCCCTTCGAAGACCAGACCTCTTCAAAGGTGGGCTTCTAAAGCCTTGTAAAGGTATATTGCTTTTTGGACCTCCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTTATCAATGTCTCAATGTCTACCATCACTTCAAAATGGTTTGGAGAAGATGAGAAGAATGTCCGAGCTCTGTTCACACTGGCAGCAAAGGTTGCCCCAACTATTATTTTTGTTGATGAGGTTGATAGCATGCTTGGGCAACGGACAAGAGTTGGGGAGCATGAAGCCATGAGGAAGATTAAAAATGAATTCATGACTCACTGGGATGGACTATTGACAAAACCTGGAGAGCAAATTCTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATAAGACGGTTTGAGCAGAGAATCATGGTTGGTCTTCCATCTGTTGAGAGCAGGGAATTGATCTTAAAAACTCTCCTGGCTGAGGAAAAGGCTGAAAATTTAGACTTTAAAGAGCTTGCAGTCATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGCACTACTGCTGCTTATCGACCTGTTAGAGAGCTACTAAAGCAGGAGAGATTGAAGGATATGGAAAATAACAAAAAAGAGGCTGAAGGCCAAAGCTCAGAAGATGCTTCAGATACTAGGGAGGATAAGGAAGAGCGAGTGATGACCTTGAGGCCTTTAAATATGGAAGACATGAGACAGGCTAAGAGTCAGGTTGCTGCAAGTTTTGCATCAGAAGGATCAATAATGGGTAAGCTGAAGCAGTGGAATGCATTGTATGGAGAAGGAGGTTCTAGGAAGAAAGAGCAACTCACTTACTTCCTTTAG 2382 0.4177 MEQKHVLLSALSVGVGFGVGLGLTSGQVVQKWVGGNRESGELSGEQLEHELLSQVVDGKDSKITFEEFPYYLSEKTQVLLTTTAFVHLKQLHFSKHTRNLSPASTGILLSGHAELYQQKLATALAHHFESKLLLLDTIDFSFKMQSKYGCARKASSFKRSLSEVTLEHVSSLFGSFSILPSTGETRGTLHRHVNNTPSKLCRNASTASDMSSNASQCGATNSAPLKHTSSLCVDEKLFIQSLYKVLVSISERSSIILYIRDVEKIFLQSHRLYNLFHKMLEKLSGPVLILGSQILDGGEDDCAEVDERLTKLFPDNIVIKPPKDEINLENWGAQLKEAVKMIQFQDNRNHIAEVLAANDIECDDLKSHLKLICHEDTTILSKHIEEIVVFAISYHLMNTQDPEYRNGKLVISFTSLSQGLSLFQEGKSSVEDTLKLEANGNKDSAGGECSGAKNEEVPPDNEFEKRIRSEVIPANEIGVTFADIGALDKIKESLQELVMLPLRRPDLFKGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPFDLDEAIIRRFEQRIMVGLPSVESRELILKTLLAEEKAENLDFKELAVMTEGYSGSDLKNLCTTAAYRPVRELLKQERLKDMENNKKEAEGQSSEDASDTREDKEERVMTLRPLNMEDMRQAKSQVAASFASEGSIMGKLKQWNALYGEGGSRKKEQLTYFL 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0950 793 SMART AAA_5 515 652 IPR003593 GO:0016887
Dere01g0950 793 Pfam AAA+ lid domain 671 714 IPR041569 -
Dere01g0950 793 Gene3D - 478 650 IPR027417 -
Dere01g0950 793 MobiDBLite consensus disorder prediction 714 737 - -
Dere01g0950 793 ProSitePatterns AAA-protein family signature. 622 641 IPR003960 GO:0005524|GO:0016887
Dere01g0950 793 Pfam ATPase family associated with various cellular activities (AAA) 519 649 IPR003959 GO:0005524|GO:0016887
Dere01g0950 793 Coils Coil 703 723 - -
Dere01g0950 793 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 478 653 - -
Dere01g0950 793 Gene3D - 651 721 - -
Dere01g0950 793 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 792 - -
Dere01g0950 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 708 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0950 Dere-ChrDere01 19502841 19510018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0950 479 710 Calmodulin-binding Proteins AT3G56690 38.559 1.72e-41 162