Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0931 ATGGCTCAACATTCACATGTACCTAAATTTGGCAATTGGGAAAGTGAAGAGAACGTTCCTTATACAGCTTTTTTTGACAAGGCAAGAAAAGGTCGAACTGGCTCAAAGATGATAAACCCAAATGATCCTGAGGAAAATTCAGATTTAGTCCTTGATAATTCATCCTCAGTTGACCTCCCGCCTACTAAATCCATAGTTGATTCAGACAATCAAGTTGGAAATGGATCAGGGAGATCAATGCCTGAGTTACAAAAGAGCAAGGAGGATGGTGATCCTAAGCCTTCTATTGACTCTGCAGCTCGGCACAACAGTGTTGGTAATAGAAGTGGCAGTGACTCTACACATCTTCATGGAGGCCACAGAGTTGGTTCTGCTAATACTCGTCGAAAACCTGCAAGACAAAGTACTGGGTCTGAGTACAGCATTGAACGTTCACCCTTTTATCGCCAGGCAAAGACCCTAGGTAGAGATAGTCCCTCATGGGAAGGAAAGAATACCTACAGCAGTCGTGGTACACCAGGAAGATCCCGACTAGGATCAGCTAATCAAGGCGTTGAAAGTCCTGATAGAGGAACATCTACTCAGATTTGGAATGAACAGCGTAAGTCAATCCTACAAGATGCTATTTCAAATTTTCTTCTGCCATCTATGGAGAAGGAAGCAAGACAATTGTTAACTGCTAAGGCGGAAAAACTGGTTATTAATGGAGTATGGGAAGGAATTATGGAACAGAGTCTCTGAGCTGCTAACGCATCCTGTATACGATTGAGAGATGACGTTAATGAGATTATTTCAATGATGTTGGAGGAAAATCTTCAAGATGTCAGTCAAGAGATGAAAGGAATAACTACAGTTTTAGGGGATGAAAGCCTGCCTCGCCTATACAAAGATTCAGAAATTTCTGTGCACCAGCTTCACAGACAACATGGCATTGTGAGGAGGGCAGTGGCTCTTGGACGTTACCTTCTAAACCCATTAGTAATGTCTCTCCCTGAAGCACAAAGCAAGCAAATAAGGAGCTGTGCGAAGGTTCACATGCAAGGAATGGCTATTGGGAGGGTTGTGGATTTGACTCGGTTTGATGGACATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGGCATCAAGGGTGAGCTTTGTGGATCCAGTAAAACATGGCAGGTTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGAGATATTCCATGGGATGAGTCCTGTGGCGCTGTGAGGAAAATTTTCATCTACACAGTAGAGGAGGTGAAGAAGCTCTCGCCCAAAATACTGCTTTCCACTGGTGAAGCAGCTAAAACAAGCAAGCTGGATTCGAAAGCAGCAGAGATCACATGA 1359 0.4341 MAQHSHVPKFGNWESEENVPYTAFFDKARKGRTGSKMINPNDPEENSDLVLDNSSSVDLPPTKSIVDSDNQVGNGSGRSMPELQKSKEDGDPKPSIDSAARHNSVGNRSGSDSTHLHGGHRVGSANTRRKPARQSTGSEYSIERSPFYRQAKTLGRDSPSWEGKNTYSSRGTPGRSRLGSANQGVESPDRGTSTQIWNEQRKSILQDAISNFLLPSMEKEARQLLTAKAEKLVINGVWEGIMEQSLXAANASCIRLRDDVNEIISMMLEENLQDVSQEMKGITTVLGDESLPRLYKDSEISVHQLHRQHGIVRRAVALGRYLLNPLVMSLPEAQSKQIRSCAKVHMQGMAIGRVVDLTRFDGHEDLLKKLEQMFGIKGELCGSSKTWQVVYTDNEDDVMMVGDIPWDESCGAVRKIFIYTVEEVKKLSPKILLSTGEAAKTSKLDSKAAEIT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0931 452 Gene3D - 246 336 IPR037027 GO:0006139
Dere01g0931 452 MobiDBLite consensus disorder prediction 39 81 - -
Dere01g0931 452 MobiDBLite consensus disorder prediction 128 143 - -
Dere01g0931 452 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 247 330 IPR017072 GO:0032968
Dere01g0931 452 SUPERFAMILY CAD & PB1 domains 342 416 - -
Dere01g0931 452 Gene3D - 337 428 - -
Dere01g0931 452 MobiDBLite consensus disorder prediction 82 96 - -
Dere01g0931 452 Pfam AUX/IAA family 384 429 IPR033389 -
Dere01g0931 452 Gene3D - 186 241 IPR023323 -
Dere01g0931 452 ProSiteProfiles PB1 domain profile. 339 432 IPR000270 GO:0005515
Dere01g0931 452 SUPERFAMILY Tex N-terminal region-like 191 235 - -
Dere01g0931 452 MobiDBLite consensus disorder prediction 159 195 - -
Dere01g0931 452 MobiDBLite consensus disorder prediction 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0931 Dere-ChrDere01 19036071 19038572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0931 332 430 B3 DNA Binding Superfamily AT1G59750 74.747 9.26e-45 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g0931 AUX_IAA 4.5e-06 CL0072