Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0916 ATGATCATTTGCCTCGATCTAATGCTGCTGATTTTGCTCTTATTCACTGTAATAAAGAGGTCATCAACGAAGACATGTCAGGGCCTTGTCCGGGTACAAAGGTTTTCGAATTTGCAGGTAGTTTCTGCAATAGGGAATGGCTGTCTTGGGGTAGTCCATTTGTGCTTAGGCGTTTGGTTTTTAGAGGAGAAATTGAGGAAAACCCACACTGCTTTTCCTATCCATTGGTGGTTTCTAGAGTTTTCACAGGGGTTCACATGGCTGTTGGTGGGTTTAACAGTAAGTCTTAGGTTGAGGGATCTTTCAAAGCCATGGTTGAGGCTATTGTCTATTCTTGTCTTCTTAATTTTTGCTATTTTCGGTGTTATTTCTACTTCTTATGTCATTAGTGGGAGAGAAGTGTCCCTTAAGGTAGCTTTAGATATTATATCTTTTCTAGGGGCAATATTGTTGCTCGTATGCTCATATAAGGGATATAAGTATGAAGACATTGACAGGAACATCGATGAAAGCCTTTATGCTCCTTTAAATGGTGAGGAGTCTGTTGACATAGGTAAAACTAGTTCTCTTAACCATGTAACCCCACTTGCCAAAGCTGGATTTTTCAGCAAAATGTCGTTTTGGTGGTTGAATCCACTGATGAAAAGGGGTAAGGAGAAAACGCTTCAGGATGAAGATATCCCAAAGTTACAGGAGGCGGATCAAGCCCAAAGTTGTTATTTGGTGTTTCTGGATCACTTGAACAGACAAAAACAGAAAGACCCATCATTGCAGCCCTCGGTTTTGTGGACAATAATTTTGTGTCATTGGAGAGATATTTTGATATCTGGGTTTTTCGCATTGCTAAAGGTACTCACTATCTCTGCAGGTCCAGTGCTTCTGAATTCCTTCATATTGGTTGCCGAGGGTAAAGAGAGATTCAAATATGAAGGTTATGTATTGGCCATATCATTTTTCTTTACCAAAATCATAGAATCAGTGTCAGAAAGGCAGTGGTACTTCCGATGCAGACGCATCGGTCTAAAAGTTAGATCATTGCTTACAGCAGCCATATATAAAAAGCAATTGCGGTTATCTAATGCTTCAAGGCTGATGCATTCAGGTGGGGAGATTATGAATTATGTGACCGTAGATGCTTACAGAATTGGAGAATTCCCCTTTTGGTTTCACCAGACTTGGACAACTAGTGTTCAACTATGTATTGCATTAGTAGTTCTTTTCCATGCTGTGGGGCTAGCAACAATTGCTTCCTTGGCGGTCATAGTGCTCACTGTGCTTTCCAATACTCCACTTGCAAAGTTACAGCACAAGTATCAGAGCAAACTTATGGTGGCACAAGATGGGAGATTGAAAGCTTGTTCTGAGGCTCTTGTGAATATGAAAGTACTAAAGCTATATGCATGGGAAACCCATTTTCAGAATGCTATAGAAAACTTGAGGGAAGTGGAGCTCAAATGGTTGTCTGCATTGCAGTTAAGAAAGGCATACAACACCTTTCTCTTTTGGTCTTCACCTGTTTTGGTCTCTGCTGCTTCGTTTGTGGCATGTTACTTCCTCAAAGTTCCTTTGCATGCAAATAATGTTTTCACCTTTGTGGCAACTTTACGCCTGGTTCAAGATCCAATCAGAACTTTTGCTGATGTTATTGGGGTGGTCATTCAAGCAAAAGTAGCATTTACTCGGATTGTGAAATTCCTTGAGGCACAAGAGCTGCACAGTGCAAGTGTCAAAAAGAAGTGCACAAGTGAGAATTTCAATGGCTCCATACGAATTAAGTCAGCTGACTTCTCATGGGAAGATAATGTATCGAAGCCCACTCTAAGGAACATAAATCTAGAGGTTAAACCAGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGAAAATCCACCTTATTAGCTGCAATTCTTGGAGAAGTTCCTATTACTCATGGAACTATTGAAGTTCAAGGGACGTTTGCTTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGAAAATATATTGTTTGGATCAGCTATGGATGCTCAAAGGTATCAAGAAACACTTGAAAGGTCATCCTTAGTGAAGGATCTTGAGTTGTTTCCCCATGGCGATCTCACAGAAATAGGGGAGAGAGGAGTAAACCTTAGTGGAGGTCAGAAACAGCGACTTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACAAATTTATTTAATGAATATGTCATGGATGCACTAAGAGGAAAGACAGTCTTACTTGTGACTCATCAAGTTGACTTCCTCCCAGCGTTTGATTCTATTCTGCTCATGTCTGATGGAGAAATTCGGGAAGCTGCCCCTTATCATCATCTATTGTCCTCAAGCACAGAATTTCAAGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTGAAAGGCTTCCAGATGTGACTTCTGCTCAGAAGCGTGCAAATTCTGTTAAAGAGATTAATAAATCTTATACAGAGAAGCAGTTTAAAGCTTCAACTAGTGATCAATTAATTAAGCAAGAAGAAAGGGAAATCGGAGACACAGGGCTAAAGCCTTACTTGCAGTATCTGAATCATAACAAGGGTTATCTATACTTCGCTGTTGCTATCCTTTCCCACCTTATATTTGTGCTTGGTCAGGTGTTACAGAACTCGTGGATGGCTGCTAGTGTTGACAATCCCCATGTCAGCAATTTGCGATTGATTGTGGTGTACTTGTTGATTGGATTCTCTTCAACAAGTCTCTTGTTGGCCAGGAGTCTTAGTATAGTTGCTATGGGTCTTCGATCATCAAAGTCTTTATTTTCACAGCTACTGAACTCTCTTTTTCGTGCCCCGATGTCTTTTTATGACTCCACACCTCTGGGAAGGATACTTAGTAGGGTCTCATCTGATATGAGCATTGTTGATCTGGATGTCCCATTCAGCCTTATGTTCGCTGCTGGAGCCACTACAAATTTGTATGCTAATCTTACAGTTTTAGCAGTTGTTACTTGGCAAGTCTTGTTTATCTCTATACCGATGATTTATATGGCTTATCTCCTGCAGAAATACTACTTTTCCTCTGCAAAAGAATTGATGCGGATAAATGGCACAACAAAATCCTTTGTAGCTAATCATCTAGCAGAATCAATTGCCGGAGCTATGACAATAAGGGCTTTTGAAGAGGAGGATCGTTTCTTTGCTAAGAGTCTTGATTTAATTGATGTCAATGCTTCTCCTTTCTTCCATAATTTTGCAGCAAATGAGTGGTTGATTCAACGTTTAGAAACACTCAGTGCAGTTGTTCTTGCCTCTGCAGCACTTTGCATGGTAGTGCTTCCACCTGGGTCTTTCACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCATTAAATTCATCCCTTGTATACTCAATTCAAAGACAGTGCATAATATCAAACTATGTAATATCAGTAGAGAGGCTGAATCAATACATGCATATACCAAGTGAGGCTCCAGTGGTCATTGAAGGAAATCGCCCTCCTGTTAATTGGCCTGTAGTGGGCAAAGTAGAAATAAATAATTTGCAGATAAGATATAGGCCTGATGCACCACTTGTACTCCGAGGGATCTCATGCACGTTTGAAGGAGGGGACAAGATTGGCATTGTTGGCAGGACAGGCAGTGGAAAGTCCACTCTCATAGGTGCCTTGTTCCGCCTCGTGGAGCCGGCAGGTGGAAAGATTATTGTTGATGGCATAGACATTTCTTCTATTGGTCTCCATGATTTGAGGTCACGTTTTGGTATCATACCACAAGATCCCACTCTTTTTAATGGCACAGTTAGATATAACTTGGACCCCTTGTGTCAACACTCTGATCATGAGATATGGGAGGTTCTTGCCAAGTGTCAGTTGCAAGAGGCTGTTCAAGAGAAAGAAGGCGGATTAGACTCTTCAGTTGTGGAAGATGGATCAAACTGGAGCATGGGACAACGGCAGCTATTCTGTTTGGGGCGTGCTCTTCTGAGGAGAAGTAGGATTTTGGTGCTTGATGAAGCAACTGCATCTATTGATAATGCCACTGATCTGATTCTGCAGAAAACTATAAGGAGTGAGTGTGCAGATTGTACTGTGATCACAGTAGCACACCGGATACCAACTGTGATGGATTGCACTAAGGTCCTCTCTATCAGTGATGGAAAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATCTCTGTTTGGACAGCTTGTGAAGGAATACTGGTCCCATCTTCAGTCTGCAGAATCACATTGA 4335 0.4148 MIICLDLMLLILLLFTVIKRSSTKTCQGLVRVQRFSNLQVVSAIGNGCLGVVHLCLGVWFLEEKLRKTHTAFPIHWWFLEFSQGFTWLLVGLTVSLRLRDLSKPWLRLLSILVFLIFAIFGVISTSYVISGREVSLKVALDIISFLGAILLLVCSYKGYKYEDIDRNIDESLYAPLNGEESVDIGKTSSLNHVTPLAKAGFFSKMSFWWLNPLMKRGKEKTLQDEDIPKLQEADQAQSCYLVFLDHLNRQKQKDPSLQPSVLWTIILCHWRDILISGFFALLKVLTISAGPVLLNSFILVAEGKERFKYEGYVLAISFFFTKIIESVSERQWYFRCRRIGLKVRSLLTAAIYKKQLRLSNASRLMHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALVVLFHAVGLATIASLAVIVLTVLSNTPLAKLQHKYQSKLMVAQDGRLKACSEALVNMKVLKLYAWETHFQNAIENLREVELKWLSALQLRKAYNTFLFWSSPVLVSAASFVACYFLKVPLHANNVFTFVATLRLVQDPIRTFADVIGVVIQAKVAFTRIVKFLEAQELHSASVKKKCTSENFNGSIRIKSADFSWEDNVSKPTLRNINLEVKPGQKVAICGEVGSGKSTLLAAILGEVPITHGTIEVQGTFAYVSQTAWIQTGTIRENILFGSAMDAQRYQETLERSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRLQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYVMDALRGKTVLLVTHQVDFLPAFDSILLMSDGEIREAAPYHHLLSSSTEFQDLVNAHKETAGSERLPDVTSAQKRANSVKEINKSYTEKQFKASTSDQLIKQEEREIGDTGLKPYLQYLNHNKGYLYFAVAILSHLIFVLGQVLQNSWMAASVDNPHVSNLRLIVVYLLIGFSSTSLLLARSLSIVAMGLRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDMSIVDLDVPFSLMFAAGATTNLYANLTVLAVVTWQVLFISIPMIYMAYLLQKYYFSSAKELMRINGTTKSFVANHLAESIAGAMTIRAFEEEDRFFAKSLDLIDVNASPFFHNFAANEWLIQRLETLSAVVLASAALCMVVLPPGSFTSGFIGMALSYGLSLNSSLVYSIQRQCIISNYVISVERLNQYMHIPSEAPVVIEGNRPPVNWPVVGKVEINNLQIRYRPDAPLVLRGISCTFEGGDKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLCQHSDHEIWEVLAKCQLQEAVQEKEGGLDSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRSECADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMNLMKREGSLFGQLVKEYWSHLQSAESH 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0916 1444 FunFam ABC transporter C family member 10 257 570 - -
Dere01g0916 1444 Gene3D - 1181 1433 IPR027417 -
Dere01g0916 1444 CDD ABC_6TM_ABCC_D2 880 1173 IPR044726 GO:0140359
Dere01g0916 1444 FunFam ABC transporter C family member 5 847 1179 - -
Dere01g0916 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 812 IPR027417 -
Dere01g0916 1444 CDD ABC_6TM_ABCC_D1 275 562 IPR044746 GO:0140359
Dere01g0916 1444 SUPERFAMILY ABC transporter transmembrane region 262 562 IPR036640 GO:0005524|GO:0016020
Dere01g0916 1444 ProSitePatterns ABC transporters family signature. 714 728 IPR017871 GO:0005524|GO:0016887
Dere01g0916 1444 CDD ABCC_MRP_domain2 1196 1416 - -
Dere01g0916 1444 CDD ABCC_MRP_domain1 589 789 - -
Dere01g0916 1444 Pfam ABC transporter 1215 1363 IPR003439 GO:0005524
Dere01g0916 1444 FunFam ABC transporter C family member 10 572 825 - -
Dere01g0916 1444 Pfam ABC transporter transmembrane region 882 1122 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0916 1444 Pfam ABC transporter transmembrane region 273 539 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0916 1444 Gene3D ABC transporter type 1, transmembrane domain 246 570 IPR036640 GO:0005524|GO:0016020
Dere01g0916 1444 Gene3D ABC transporter type 1, transmembrane domain 845 1179 IPR036640 GO:0005524|GO:0016020
Dere01g0916 1444 FunFam ABC transporter C family member 3 1181 1433 - -
Dere01g0916 1444 Pfam ABC transporter 607 741 IPR003439 GO:0005524
Dere01g0916 1444 SUPERFAMILY ABC transporter transmembrane region 871 1178 IPR036640 GO:0005524|GO:0016020
Dere01g0916 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 589 812 IPR003439 GO:0005524
Dere01g0916 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1188 1425 IPR027417 -
Dere01g0916 1444 Gene3D - 584 818 IPR027417 -
Dere01g0916 1444 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 885 1161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0916 1444 SMART AAA_5 1224 1416 IPR003593 GO:0016887
Dere01g0916 1444 SMART AAA_5 616 789 IPR003593 GO:0016887
Dere01g0916 1444 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 274 554 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0916 1444 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 197 1432 - -
Dere01g0916 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1198 1432 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0916 Dere-ChrDere01 18687214 18693941 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0916 402 1439 Calmodulin-binding Proteins AT2G36910 24.460 4.74e-56 212