Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0913 ATGGAGGATTTCTGGAGCGTCTTTTGTGGACAATCTGGTTGTTCAGAAAGAGCTGCAAAGCCTTGCAGTTATGATTTCGAGCTTTTGAGAGATCCTTCAACGTGCATTAATCATTCGTTGATCATATGCCTTGATCTTTTGCTGCTGATTTTGCTCTTATTCACTGTAATAAAGAGGCCATCAACGAAGACATGTCAGGGCCTTGTCCGGGTACGAAGGTTTTCGAATTTGCAGGTAGTTTCTGCAATAGGGAATGGCTGTCTTGGGGTAGTCCATTTGTGCTTAGGCGTTTGGTTTTTAGAGGAGAAATTGAGGAAAAACCACACTGCTTTTCCTATCAATTGGTGGCTTCTAGAGTTTTCACAGGGGTTCACATGGTTGGTGGTGGGTATGACAGTAAGTCTTGGGTTGAGGGAACTTTCAAAACCATGGTTGAGGTTGTTGTCTATTCTTGTCTTTTTAATTTCTGGTACTTTCGGTGTTATTTCCATTTTTTATGTCATTAGTGGGAAAGAAGTGTCCCTTAAGGTAGCTTTAGATGTTGTATCTTTTCCAGGAGCAATATTGTTGCTCATATGCTCATATAAGGGATATGAGTTTGAAGACACTGACGGGAATAAAGATGAAAGCCTTTATGCTCCTTTAAATGGTGAGGAGTCCAGTGACATTGGTAAAACTAGTTCTCTTAACCATGTAACCCCATTTGCCAAAGCTGGATTCTTCAGCAAAATGTCGTTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAGGAGAAAACGCTTCAGGATGAAGATATCCCAGATTTACAGGAGGCAGATCAAGCCAAAAGTTGTTATTTGGTGTTTCTGGATCGATTGAACAGACAAAAACTGAATGAACCAGCATCACAGCCCTCGGTTGTGTGGACAATAATTTTGTGCCATTGGAAAGATATTTTGATATCTGGGTTTTTTGCATTGCTAAAGGTACTTACTATCTCTGCTGGTCCGTTGCTTCTGAATTCTTTCATATTGGTTGCTGAGGGTAAAGAGAGTTCCAAATATGAAGGTTACGTATTGGCCATATCACTTTTCTTTACCAAGAACATAGAATCAGTATCACAGAGACAGTGGTACTTCCGTAGCAGACTCATCGGTCTAAAAGTTAGATCATTGCTTTCTGCAGCCATTAATAAAAAGCAATTGCGGTTATCTAATGCTTCAAGGTTGATGCATTCAGGCGGGGAGATTATGAATTATGTGACTGTAGATGCTTATAGAATTGGAGAATTCCCCTTTTGGTTTCACCAAACTTGGACAACAAGTGTTCAACTATGTATTGCATTAGTAATTCTTTTCAATGCCGTGGGGCTAGCAACAATTGCTTCCTTGGTGGTCATAGTGCTCACTGTGCTTTGCAATACTCCACTTGCAAAGTTACAGCATAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTAGTGAATATGAAAGTACTAAAACTATATGCATGGGAAACCCATTTTCAGAATGCTATAGAAAACTTGAGGAAAGTGGAGCTCAAACGGTTATCTGCAGTGCAGTTAATAAAGGCATACAACAACTTTCTCTTTTGGTCTTCACCTGTTTTGGTCTCTGCTGCTTCGTTTGGGGCATGTTATTTCCTCAAAGTTCCTTTACATGCAAATAATGTTTTCACCTTCGTGGCAACTTTAAGCCTGGTTCAAGATCCAATCAGAACTATCCCTGATGTCATTGGGGTGGTCATTCAAGCAAAAGTAGCATTTGTTCGGATTGTGAAATTCCTTGAGGCACCAGAGCTGCACAGTGCAAATGACAGAAAGAAGTGCATAAGTGAGAGTTTCAGTGGCTCCATACAAATCAAGTCAGCTGACTTTTCATGGGAAGATAATGTATCGAAGCCCACTCTAAGAAACATAAATCTAGAGGTTAAACCAGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGCAAATCAACCTTATTAGCTGCAATTCTTGGAGAAGTTCTTAATACTCATGGAACTATTGAAGTCCACGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGACAATATATTGTTTGGATCAGCTACGGATGCTCAAAGGTATCAAGAAACACTTGAAAGGTCATCCTTAGTGAAGGATCTTGAGTTGTTTCCCCATGGCGATCTCACAGAAATAGGGGAGAGAGGAGTAAACCTAAGTGGAGGTCAGAAACAGCGACTTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACGGCCACAAATTTGTTTAATGAATATGTCATGGTTGCACTTCGAGGAAAGACAGTCTTACTTGTGACTCATCAAGTTGACTTCCTTCCGGCGTTTGATTCTATTCTGCTCATGTCTGATGGGGAAATTCGGGAAGCTGCCCCTTATCACCATCTACTGTCCTCAAGCATGGAATTTCAGGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTGAAAGGCTTCCAGATGTGACTTCTGCTCAGATGCGCACAAATTCTGTCAAAGAAATTAACAAATTTTATGTAGAGAAGCCGTTTAAAGCTTCAACTAGTGATCAATTAATTAAGCAAGAAGAAAGAGAAATCGGAGACACGGGGCTAAAGCCTTACTTGCAGTATCTGAATCAGAACAAGGGTTATCTATACTTCTCTTTTGCTGCCCTTTCCCATGTGACATTTGTGATTGGTCAAGTATTACAGAACTCATGGATGGCTGCTAATGTTGACAATCTCCATGTGAGCACATTGCGATTGATTGTGGTGTACTTGTTGATTGGAGTCATTTCAACAACTTTCTTGTTGGTCAGGAGTCTTGCAGTAGTTTCTATGGGTCTTCAATCTACAAAGTCTTTGTTTTCACAGCTATTGAACTCCCTTTTTCGTGCGCCAATGTCTTTTTATGACTCCACACCTCTGGGAAGAATACTTAGTAGGGTCTCATCTGACATGAGCATTGTTGATCATGATGTCCCATTCAGCTTTATGTTCGCTGTTGGAGCCACTATAAATTGTTATGCTAATCTTACAGTTTTAGCAGTTGTTACATGGCAAGTCTTGTTTATCTCTGTGCCGATGATTTATATTGCAATTCTCCTGCAGAGATACTACTTTTCCTCTGCAAATGAATTGATGCGGTTGAATGGCACAACAAAATCCTTTGTAGCTAATCATCTAGCAGAATCTGTTGCCGGAGCTATGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTCACCAAGAATCTTGATTTAATTGATGTCAATGCCTCTCCTTTTTTCCATAATTTTGCAGCAAATGAGTGGTTAATTCAACGTTTAGAAACAGTCAGCGCAGTTGTTCTTGCCTCTGCAGCACTTTGCATGGTAGTGCTTCCACCTGGGACTTTCACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCATTGAATGGATCCCTTGTATTCTCAATTCAAAACCAGTGCACTACAGCAAACTACATAATATCAGTAGAGAGGCTGAATCAATACATGCATATACCAAGTGAGGCTCCGGTAGTCATTGAAGGAAATCGCCGTCCTGTGGATTGGCCTGTAGTCGGCAAAGTAGAAATAAATAATTTGCAGATAAGATATAGGCCTGGCTCACCACTTGTACTCCGAGGTATCTCATGCACGTTTGAAGGAGGGCACAAGATTGGCATTGTTGGCAGGACAGGCAGTGGAAAGTCCACTCTTATTGGTGCCTTGTTCCGCCTCGTGGAGCCGGTAGGTGGAAAGATTATAGTTGATGGCATTGACATTTCTTCTATTGGTCTCCATGATTTGAGGTCACGTTTTGGCATCATACCACAAGATCCCACTCTCTTTAGTGGCACAGTTAGATATAACTTGGACCCTTTATGTCAACACTCAGATCACGAGATGTGGGAGGTTCTTGGAAAGTGTCAGTTGCAAGAGGCAGTTCAAGCGAAAGAAGGCGGCTTAGACTCTTCAGTTGTGGAAGATGGGTCAAACTGGAGCATGGGACAACGGCAGCTATTCTGTTTGGGGCGTGCTCTTCTTAGGAGAAGTCGGATTTTGGTGCTCGATGAAGCAACTGCATCTATTGATAATGCCACTGATTTGATTCTGCAGAAAACTATAAGGAGTGAGTTTGCAGATTGTACTGTGATCACTGTAGCACACCGGATACCAACTGTGATGGATTGCACCAAGGTCCTCTCCATCAGTGATGGTAAGAAAATTGTTTGGATTGTATTTGTAGGAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATCTCTGTTTGGACAGCTTGTGAAGGAATACTGGTCTCATCTTCAGTCTGCAGAATCACATTGA 4482 0.4157 MEDFWSVFCGQSGCSERAAKPCSYDFELLRDPSTCINHSLIICLDLLLLILLLFTVIKRPSTKTCQGLVRVRRFSNLQVVSAIGNGCLGVVHLCLGVWFLEEKLRKNHTAFPINWWLLEFSQGFTWLVVGMTVSLGLRELSKPWLRLLSILVFLISGTFGVISIFYVISGKEVSLKVALDVVSFPGAILLLICSYKGYEFEDTDGNKDESLYAPLNGEESSDIGKTSSLNHVTPFAKAGFFSKMSFWWLNPLMKRGQEKTLQDEDIPDLQEADQAKSCYLVFLDRLNRQKLNEPASQPSVVWTIILCHWKDILISGFFALLKVLTISAGPLLLNSFILVAEGKESSKYEGYVLAISLFFTKNIESVSQRQWYFRSRLIGLKVRSLLSAAINKKQLRLSNASRLMHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALVILFNAVGLATIASLVVIVLTVLCNTPLAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWETHFQNAIENLRKVELKRLSAVQLIKAYNNFLFWSSPVLVSAASFGACYFLKVPLHANNVFTFVATLSLVQDPIRTIPDVIGVVIQAKVAFVRIVKFLEAPELHSANDRKKCISESFSGSIQIKSADFSWEDNVSKPTLRNINLEVKPGQKVAICGEVGSGKSTLLAAILGEVLNTHGTIEVHGKFAYVSQTAWIQTGTIRDNILFGSATDAQRYQETLERSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRLQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYVMVALRGKTVLLVTHQVDFLPAFDSILLMSDGEIREAAPYHHLLSSSMEFQDLVNAHKETAGSERLPDVTSAQMRTNSVKEINKFYVEKPFKASTSDQLIKQEEREIGDTGLKPYLQYLNQNKGYLYFSFAALSHVTFVIGQVLQNSWMAANVDNLHVSTLRLIVVYLLIGVISTTFLLVRSLAVVSMGLQSTKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDMSIVDHDVPFSFMFAVGATINCYANLTVLAVVTWQVLFISVPMIYIAILLQRYYFSSANELMRLNGTTKSFVANHLAESVAGAMTIRAFEEEDRFFTKNLDLIDVNASPFFHNFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNGSLVFSIQNQCTTANYIISVERLNQYMHIPSEAPVVIEGNRRPVDWPVVGKVEINNLQIRYRPGSPLVLRGISCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPVGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFSGTVRYNLDPLCQHSDHEMWEVLGKCQLQEAVQAKEGGLDSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRSEFADCTVITVAHRIPTVMDCTKVLSISDGKKIVWIVFVGELVEYDEPMNLMKREGSLFGQLVKEYWSHLQSAESH 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0913 1493 FunFam ABC transporter C family member 10 296 609 - -
Dere01g0913 1493 CDD ABCC_MRP_domain2 1235 1465 - -
Dere01g0913 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1481 IPR003439 GO:0005524
Dere01g0913 1493 SMART AAA_5 655 828 IPR003593 GO:0016887
Dere01g0913 1493 SMART AAA_5 1263 1446 IPR003593 GO:0016887
Dere01g0913 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0913 1493 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1481 - -
Dere01g0913 1493 SUPERFAMILY ABC transporter transmembrane region 301 606 IPR036640 GO:0005524|GO:0016020
Dere01g0913 1493 Gene3D - 623 857 IPR027417 -
Dere01g0913 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 851 IPR003439 GO:0005524
Dere01g0913 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 851 IPR027417 -
Dere01g0913 1493 SUPERFAMILY ABC transporter transmembrane region 910 1219 IPR036640 GO:0005524|GO:0016020
Dere01g0913 1493 CDD ABC_6TM_ABCC_D2 919 1212 IPR044726 GO:0140359
Dere01g0913 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0913 1493 Gene3D ABC transporter type 1, transmembrane domain 885 1218 IPR036640 GO:0005524|GO:0016020
Dere01g0913 1493 FunFam ABC transporter C family member 10 612 864 - -
Dere01g0913 1493 Pfam ABC transporter 646 780 IPR003439 GO:0005524
Dere01g0913 1493 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
Dere01g0913 1493 Pfam ABC transporter transmembrane region 921 1172 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0913 1493 Pfam ABC transporter transmembrane region 312 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0913 1493 Gene3D - 1221 1482 IPR027417 -
Dere01g0913 1493 FunFam ABC transporter C family member 5 886 1218 - -
Dere01g0913 1493 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Dere01g0913 1493 CDD ABCC_MRP_domain1 628 828 - -
Dere01g0913 1493 CDD ABC_6TM_ABCC_D1 314 601 IPR044746 GO:0140359
Dere01g0913 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1228 1449 IPR027417 -
Dere01g0913 1493 Gene3D ABC transporter type 1, transmembrane domain 299 614 IPR036640 GO:0005524|GO:0016020
Dere01g0913 1493 FunFam ABC transporter C family member 3 1220 1482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0913 Dere-ChrDere01 18619323 18626044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0913 620 841 Calmodulin-binding Proteins AT2G36910 31.224 5.21e-25 111