Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0912 ATGCGTCCTACCATTCAAACTCCGTTTCTAGCTTTCGCTCTCATTTTACCGTCCGGCGAGAGACATTTCATCGTTGTCAGTGACGAACAAGTTCGCATTTTAAAAAACCAACGAAACAGCCACACTCGCACTCGCACAACAGTAACAACAACTTCTTTGTTTTCTTCCACGCGTGAAAATTCCTTCAACTCTGCTGGAGACAGATACCTCCTTACAAACTTATTTTGGCGTCCCATGCCTGTGGTTGCCGATCATTTGAGGTTCCGATTTGAGCAGCAAAGAGAAGACTCAAAGAAGATGGAGGATTTCTGGAGCGTCTTTTGTGGACAATCTGGTTGTTCAGAAAGAGCGGAAAAGCCTTGCAGTTATGATTTCGAGCTTTTGAGAGATCCTTCAACGTGCATTAATCATTCGTTGATCATATGCCTTGATCTTTTGCTGCTGATTTTGCTCTTATTCACTGTAATAAAGAGGCCATCAACGAAGACATGTCAGGGCCTTGTCCGGGTACGAAGGTTTTCGAATTTGCAGGTAGTTTCTGCAATAGGGAATGGCTGTCTTGGGGTAGTCCATTTGTGCTTAGGCGTTTGGTTTTTAAAGGAGAAATTGAGGAAAAACCACACTGCTTTTCCTATCAATTGGTGGCTTCTAGAGTTTTCACAGGGGTTCACATGGTTGTTGGTGGGTTTGACAGTAAGTCTTAGGTTGAGGGAACTTTCAAAACCATGGTTGAGGCTGTTGTCTATTCTTGTCCTCTTAATTTCTGGTACTTTCGGTGTTATTTCCATTTTTTATGTCATTAGTGGGAAAGAAGTGTCCCTTAAGGTAGCTTTAGATGTTGTATCTTTTCCAGGAGCAATATTGTTGCTCATATGCTCATATAAGGGATATGAGTTTGAAGACACTGACGGGAATAAAGATGAAAGCCTTTATGCTCCTTTAAATGGTGAGGAGTCCAGTGACATTGGTAAAACTAGTTCTCTTAACCATGTAACCCCATTTGCCAAAGCTGGATTCTTCAGCAAAATGTCGTTTTGGTGGTTGAATCCACTGATGAAAAGGGGTAAGGAGAAAACGCTTCAGGATGAAGATATCCCAAATTTACAGGAGGCAGATCAAGCCAAAAGTTGTTATTTGGTGTTTCTGGATCGATTGAACAGACAAAAACAGAATGAACCATCATCACAGCCCTCGGTTGTGTGGACAATAATTTTGTGCCATTGGGAAGATATTTTGATATCTGGGTTTTTTGCATTGCTAAAGGTACTTACTATCTCTGCTGGTCCGTTACTTCTGAATTCTTTCATATTGGTTGCTGAGGGTAAAGAGAGTTCCAAATATGAAGGTTACGTATTGGCCATATCACTTTTCTTTACCAAGATCATAGAATCAGTATCACAGAGACAGTGGTACTTCCGAAGCAGACTCATCGGTCTAAAAGTTAGATCATTGCTTACTGCAGCCATTTATAAAAAGCAATTGCAGTTATCTAATGCTTCAAGGTTGATGCATTCAGGCGGGGAGATTATGAATTATGTGACTGTAGATGCTTATAGAATTGGAGAATTCCCCTTTTGGTTTCACCAAACTTGGACAACAAGTGTTCAACTATGTATTGCATTAGTAATTCTTTTCAATGCCGTGGGGCTAGCAACAATTGCTTCCTTGGTGGTCATAGTGCTCACTGTGCTTTGCAATACTCCACTTGCAAAGTTACAGCATAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAAGCTCTAGTGAATATGAAAGTACTAAAGCTATATGCATGGGAAACCCATTTTCAGAATGCTATAGAAAACTTGAGGAAAGTGGAGCTCAAATGGTTATCTGCAGTGCAGTTAAGAAAGGCATACAACACCTTTCTCTTTTGGTCTTCACCTGTTTTGGTCTCTGCTGCTTCGTTCGGGGCATGTTATTTCCTCAAAGTTCCTTTACATGCAAATAATGTTTTCACCTTCGTGGCAACTTTACGCCTGGTTCAAGATCCAATCAGAACTATCCCTGATGTCATTGGGGTGGTCATTCAAGCAAAAGTAGCATTTGTTCGGATTGTGAAATTCCTTGAGGCACCAGAGCTGCACAGTGCAAATGACAGAAAGAAGTGCATAAGTGAGAGTTTCAGTGGCTCCATACAAATCAAGTCGGCTGACTTTTCATGGGAAGATAATGTATCGAAGCCCACTCTAAGAAACATAAATCTAGAGGTTAAACCAGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGCAAATCAACCTTATTAGCTGCAATTCTTGGAGAAGTTCTTAATACTCATGGAACTATTGAAGTCCACGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGACAATATATTGTTTGGATCAGCTACGGATGCCCAAAGGTATCAAGAAACACTTGAAAGGTCATCCTTAGTGAAGGATCTTGAGTTGTTTCCCCATGGCGATCTCACAGAAATAGGGGAGAGAGGAGTAAACCTAAGTGGAGGTCAGAAACAGCGACTTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACAAATTTGTTTAATGAATATGTCATGGTTGCACTTCGAGGAAAGACAGTCTTACTTGTGACTCATCAAGTTGACTTCCTTCCGGCGTTTGATTCTATTCTGCTCATGTCTGATGGGGAAATTCGGGATGCTGCCCCTTATCACCATCTACTGTCCTCAAGCATGGAATTTCAGGACCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTGAAAGGCTTCCAGATGTGACTTCTGCTCAGATGCGCACAAATTCTGTTAAAGAGATTAACAAATTTTATGTAGAGAAGCCGTTTAAAGCTTCAACTAGTGATCAATTAATTAAGCAAGAAGAAAGAGAAATCGGAGACACGGGGCTAAAGCCTTACTTGCAGTATCTGAATCAGAACAAGGGTTATCTATACTTCTCTTTTGCTGCCCTTTCCCATGTGACATTTGTGATTGGTCAAGTATTACAGAACTCATGGATGGCTGCTAATGTTGACAATCTCCATGTGAGCACATTGCGATTGATTGTGGTGTACTTGTTGATTGGAGTCATTTCAACAACTTTCTTGTTGGTCAGGAGTCTTGCAGTTGTTTCTATGGGTCTTCAATCATCAAAGTCTTTGTTTTCACAGCTACTGAACTCCCTTTTTCGTGCGCCAATGTCTTTTTATGACTCCACACCTCTGGGAAGGATACTTAGTAGGGTCTCATCTGACATGAGCATTGTTGATCTTGATGTCCCATTCAGCTTTATGTTCGCTGTTGGAGCCACTATAAATTGTTATGCTAATCTTACAGTTTTAGCAGTTGTTACTTGGCAAGTCTTGTTTATCTCTGTACCGATGATTTATATTGCAATTCTCCTGCAGAGATACTACTTTTCCTCTGCAAAAGAATTGATGCGGATGAATGGCACAACGAAATCCTTTGTAGCTAATCATCTAGCAGAATCTGTTGCCGGAGCTATGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTCACCAAGAATCTTGATTTAATAGATGTCAATGCCTCTCCTTTCTTCCATAATTTTGCAGCAAATGAGTGGTTAATTCAACGTTTAGAAACAGTCAGCGCAGTTGTTCTTGCCTCTGCAGCACTTTGCATGGTAGTGCTTCCACCTGGGACTTTCACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCATTGAATGGATCCCTTGTATTCTCAATTCAAAATCAGTGCACTACAGCAAACTACATAATATCAGTAGAGAGGCTGAATCAATACATGCATATACCAAGTGAGGCTCCGGTAGTCATTGAAGGAAATCGCCCCCCTGTGGATTGGCCAATAGTCGGCAAAGTAGAAATAAATAATTTGCAGATAAGATATAGGCCTGGCTCACCACTTGTACTCCGAGGTATCTCATGCACGTTTGAAGGAGGGGACAAGATTGGCATTGTTGGCAGGACAGGCAGTGGAAAGTCCACTCTTATTGGTGCCTTGTTCCGCCTCGTGGAGCCGGCAGGTGGAAAGATTATAGTTGATGGCATAGACATTTCTTCCATTGGTCTCCATGATTTGAGGTCACGTTTTGGCATCATACCACAAGATCCCACTCTCTTTAATGGCACAGTTAGATATAACTTGGACCCTTTATGTCAACACTCAGATCACGAGATATGGGAGGTTCTTGGAAAGTGTCAGTTGCAAGAGGCAGTTCAAGCGAAAGAAGGCAGCTTAGACTCTTCAGTTGTGGAAGATGGGTCAAACTGGAGCATGGGACAACGGCAGCTATTCTGTTTGGGGCGTGCTCTTCTTAGGAGAAGTCGGATTTTGGTGCTCGATGAAGCAACTGCATCTATTGATAATGCCACTGATTTGATTCTGCAGAAAACTATAAGGAGTGAGTTTGCAGATTGTACTGTGATCACTGTAGCACACCGGATACCAACTGTGATGGATTGCACCAAGGTCCTCTCCATCAGTGATGGTAAGAAAATTGTTTGGATTGTATTTGTAGGAAAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATCTCTGTTTGGACAGCTTGTGAAGGAATACTGGTCTCATCTTCAGTCTGCAGAATCACATTGA 4779 0.4179 MRPTIQTPFLAFALILPSGERHFIVVSDEQVRILKNQRNSHTRTRTTVTTTSLFSSTRENSFNSAGDRYLLTNLFWRPMPVVADHLRFRFEQQREDSKKMEDFWSVFCGQSGCSERAEKPCSYDFELLRDPSTCINHSLIICLDLLLLILLLFTVIKRPSTKTCQGLVRVRRFSNLQVVSAIGNGCLGVVHLCLGVWFLKEKLRKNHTAFPINWWLLEFSQGFTWLLVGLTVSLRLRELSKPWLRLLSILVLLISGTFGVISIFYVISGKEVSLKVALDVVSFPGAILLLICSYKGYEFEDTDGNKDESLYAPLNGEESSDIGKTSSLNHVTPFAKAGFFSKMSFWWLNPLMKRGKEKTLQDEDIPNLQEADQAKSCYLVFLDRLNRQKQNEPSSQPSVVWTIILCHWEDILISGFFALLKVLTISAGPLLLNSFILVAEGKESSKYEGYVLAISLFFTKIIESVSQRQWYFRSRLIGLKVRSLLTAAIYKKQLQLSNASRLMHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALVILFNAVGLATIASLVVIVLTVLCNTPLAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWETHFQNAIENLRKVELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLKVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFVRIVKFLEAPELHSANDRKKCISESFSGSIQIKSADFSWEDNVSKPTLRNINLEVKPGQKVAICGEVGSGKSTLLAAILGEVLNTHGTIEVHGKFAYVSQTAWIQTGTIRDNILFGSATDAQRYQETLERSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRLQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYVMVALRGKTVLLVTHQVDFLPAFDSILLMSDGEIRDAAPYHHLLSSSMEFQDLVNAHKETAGSERLPDVTSAQMRTNSVKEINKFYVEKPFKASTSDQLIKQEEREIGDTGLKPYLQYLNQNKGYLYFSFAALSHVTFVIGQVLQNSWMAANVDNLHVSTLRLIVVYLLIGVISTTFLLVRSLAVVSMGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDMSIVDLDVPFSFMFAVGATINCYANLTVLAVVTWQVLFISVPMIYIAILLQRYYFSSAKELMRMNGTTKSFVANHLAESVAGAMTIRAFEEEDRFFTKNLDLIDVNASPFFHNFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNGSLVFSIQNQCTTANYIISVERLNQYMHIPSEAPVVIEGNRPPVDWPIVGKVEINNLQIRYRPGSPLVLRGISCTFEGGDKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLCQHSDHEIWEVLGKCQLQEAVQAKEGSLDSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRSEFADCTVITVAHRIPTVMDCTKVLSISDGKKIVWIVFVGKLVEYDEPMNLMKREGSLFGQLVKEYWSHLQSAESH 1592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0912 1592 CDD ABCC_MRP_domain1 727 927 - -
Dere01g0912 1592 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1030 1299 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0912 1592 SMART AAA_5 1362 1545 IPR003593 GO:0016887
Dere01g0912 1592 SMART AAA_5 754 927 IPR003593 GO:0016887
Dere01g0912 1592 CDD ABCC_MRP_domain2 1334 1564 - -
Dere01g0912 1592 SUPERFAMILY ABC transporter transmembrane region 1009 1316 IPR036640 GO:0005524|GO:0016020
Dere01g0912 1592 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 412 692 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0912 1592 ProSitePatterns ABC transporters family signature. 852 866 IPR017871 GO:0005524|GO:0016887
Dere01g0912 1592 FunFam ABC transporter C family member 10 395 708 - -
Dere01g0912 1592 Pfam ABC transporter 745 879 IPR003439 GO:0005524
Dere01g0912 1592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 720 950 IPR027417 -
Dere01g0912 1592 Gene3D ABC transporter type 1, transmembrane domain 984 1317 IPR036640 GO:0005524|GO:0016020
Dere01g0912 1592 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 334 1580 - -
Dere01g0912 1592 FunFam ABC transporter C family member 5 985 1317 - -
Dere01g0912 1592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 729 950 IPR003439 GO:0005524
Dere01g0912 1592 Gene3D - 722 956 IPR027417 -
Dere01g0912 1592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1336 1580 IPR003439 GO:0005524
Dere01g0912 1592 SUPERFAMILY ABC transporter transmembrane region 400 705 IPR036640 GO:0005524|GO:0016020
Dere01g0912 1592 Gene3D ABC transporter type 1, transmembrane domain 398 712 IPR036640 GO:0005524|GO:0016020
Dere01g0912 1592 FunFam ABC transporter C family member 3 1319 1581 - -
Dere01g0912 1592 CDD ABC_6TM_ABCC_D2 1018 1311 IPR044726 GO:0140359
Dere01g0912 1592 Gene3D - 1319 1581 IPR027417 -
Dere01g0912 1592 CDD ABC_6TM_ABCC_D1 413 700 IPR044746 GO:0140359
Dere01g0912 1592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1326 1548 IPR027417 -
Dere01g0912 1592 Pfam ABC transporter 1353 1501 IPR003439 GO:0005524
Dere01g0912 1592 FunFam ABC transporter C family member 10 711 963 - -
Dere01g0912 1592 Pfam ABC transporter transmembrane region 411 677 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g0912 1592 Pfam ABC transporter transmembrane region 1020 1271 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0912 Dere-ChrDere01 18582630 18590173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0912 719 938 Calmodulin-binding Proteins AT2G36910 31.064 1.54e-24 110