Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere01g0905 | ATGCAAAATCCTTTTCCTTTAAGCCATCAATTGTCATCTATATCTGCGGAAGAATCCGCACTTGCATTTCACCAACCGCCATACTCTTTTCGGCTCCGATTCTCGCACTTTCTGAGTTTTTCTCCCTCCTTTGTCTCCTCAACCCGGTTTGGCGACGCCGGAGCCTGCATTTGTTGCCGGAATTTCTCTTCCACAACCGTTCGTGGGCCGTGGACCATCACTACCTTTCGGAGAACCCGCTTCTACCTCGTCCGAATACATGCGATCGCAGAGGGTGGTGGCGTTTTCGTCAGTTTCTCACATGGAATGGCAGATCTTGCTAGCTACGGTAATGCCGACCGTGATATCGAGCAGGCACTGATTGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCGTTTAGACTTTCCAATGATGAATCATCTCTAGTTTGGATATCAAGTGGTGAAGAAAGACGTTTGAAGCTATCTTTAGTCTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTATCTCCGTCCTGAGAAGGATTATCTGTCTTTTTCCCTTATTTATAACAACGGAAAGAGGTCCCTTGATCTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAATCACTGATATCCTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAATGATGGGGGCCTCTATCTTGATGATAACAGAGACTTGACTTCAAATCGTGCAAGTGGAAGTTCGGTTAGTACTTCACAAGATATTAGCTCTCCTGACGTTTCTGTGAGTCTTAATTCAAATTCTTCTCCAAAGTCCTTTCAGCCTGAGAATACTGCTAATTCTGAAAGGTCACATGCAACATCAGACCCAACAAATATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGGGTTAGTGTTTCAAGTGCCCCCAGTACATCCAGTCATGGGTCTGCACCAGATGATTGTGATGCTCTTGGGGATGTATACATATGGGGAGAGGTAATCTGTGAGAACATTGTGAAAGTTGGAGCTGATAAAAATGCCAGTTATTTTAGCCCAAGGGCAGATGTACTTGCCCCTAGACCACTGGAATCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAGGAATGTAATTCAACCCCGTTTAGTTGAAGCATTGGCATTTACAATTGTTAATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTATTACAATGGCTGGGGAACTATATACTTGGGGTGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGCACTGATATTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTAGAGGGACTTCAGGTTTCTTCAGTCACTTGTGGTCCATGGCACACGGCCTTGGTAACTTCAAGCGGGCAGCTTTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCACGGAGATAGGGAAAGTGTTTTTAATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACAATAGCTGTAGCATGTGGAGTGTGGCATACTGCAGCTGTGGTAGAAGTTATAGTAACACAATCCAGTGCAAGTGTTTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCCCGGCTTAAACCAACTTGCGTGCCTTCACTTATTGACTACAATTTTTATAAAATTGCTTGTGGGCACAGCTTGACAGTTGGCCTGACAACCTCAGGACATGTTTTTACAATGGGTAGCACTGTTTATGGTCAACTTGGGAATCCTCTGTCTGATGGAAAGCTGCCCTGCTTGGTTGAAGACAGGCTTGCAGGAGAATCTGTTGAAGAAATTGCATGCGGTGCATATCATGTTGCAGTTTTAACATCTAAAAATGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGGTTGGGTCACGGAGATGTTGAAGATAGGAAAATACCAACTTTGGTTGAAGCTTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAATGGGTATCAGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTCGTACACTGCCATTCCTGCAGTTCAAAGAAAGCATTAAGAGCATCTCTGGCTCCTAATCCTGGCAAGCCATATCGAGTTTGTGATTCTTGTTATGCAAAACTAAACAAGGTAGCCGAAGCTGGCAGTAATATTAGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGAAAGGTTGGATAAGTCTGAGATAAGAGTGTCCAAGGTGGTTCCTTCTAATATGGATTTGATAAAGCAGCTCGATAGTAAAGCAGTCAAACAAGGGAAGAAGGCTGATACTTTTGCCCTAGTTCGCACCTTGCAGGCACCTTCATTGCTGCAGCTGAAAGATGTGGTCTTGTCTACTGCTGTTGATCTGAGACAAACAGCTCCAAGACCAATTCTTGCACCATCTGGAGTAAGTTCCAGATCTGTATCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCTGCTACACCTATTCCAACCACGTCTGGACTTTCCTTATCCAGAAGCATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCTGAAGCTACGTTCTCAGGTTGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATTGGAGCTTCAAAGTTCAGCAAGGAAAACTCAGGAAGCTAGGGCACTTGCTGCTGAGGAGTCTGCTAAATCTAGAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCGCAGCTCAAAGATCTGGCCGAGAGGCTTCCTCCTGGAGCTAACGATGCTGAGAACATCAGACCAGCTTACCTACCAAATGGTCCGGAGTTAAATGGCATCCACTATCCGGATTCAAATGGGGAGCTTCACTCCCGAGCAGAGTCAATCAGCGCCTATAGCTTGGCCTCTGTAGGACTTGAATCATCTGTGTCAAATAGAAGAGAGGGGAATTTGTCTGGAACCTATGGAACTAATCTCTACCAGCAAAACCGGCAGCTTGTGAACTCCAATGGGACTGATGAACACCCAGATGTAAAATTGCCAAATGGTGGCGTGACTCACACAAGCAACAATGGCATGTCAGATACCGTTGATGGCAGGGTTTCAGGACCTTTACAAGATGGTGAGAGCAGTTTGAGATCGGGGGATGCTGTACTGGCAGCTAATAGTAATCAAATTGAGGCCGAATGGATTGAACAGTACGAACCTGGTGTGTATATAACACTCATGGCCCTGAAAGATGGAACGCGAGATCTAAAACGAGTTCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCAGAGAACCGTGAGAGGGTATATGAACGGTACAATGTTCGGAGCACTGACAAATCTTCAGGCCAAGCTACTCATAAGGCAGAGGGTGCTACTTCACCTGTTTCCCAATCTTAG | 3669 | 0.4503 | MQNPFPLSHQLSSISAEESALAFHQPPYSFRLRFSHFLSFSPSFVSSTRFGDAGACICCRNFSSTTVRGPWTITTFRRTRFYLVRIHAIAEGGGVFVSFSHGMADLASYGNADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLVWISSGEERRLKLSLVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKSLISSGQGGRSKIDGWNDGGLYLDDNRDLTSNRASGSSVSTSQDISSPDVSVSLNSNSSPKSFQPENTANSERSHATSDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICENIVKVGADKNASYFSPRADVLAPRPLESNVVLDVHHIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGRNVIQPRLVEALAFTIVNFVACGEFHTCAITMAGELYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVSSVTCGPWHTALVTSSGQLFTFGDGTFGVLGHGDRESVFNPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPLSDGKLPCLVEDRLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRASLAPNPGKPYRVCDSCYAKLNKVAEAGSNIRRNAMPRLSGENKERLDKSEIRVSKVVPSNMDLIKQLDSKAVKQGKKADTFALVRTLQAPSLLQLKDVVLSTAVDLRQTAPRPILAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSLSRSIADSLKKTNELLNQEVLKLRSQVESLRQRCELQELELQSSARKTQEARALAAEESAKSRAAKEVIKSLTAQLKDLAERLPPGANDAENIRPAYLPNGPELNGIHYPDSNGELHSRAESISAYSLASVGLESSVSNRREGNLSGTYGTNLYQQNRQLVNSNGTDEHPDVKLPNGGVTHTSNNGMSDTVDGRVSGPLQDGESSLRSGDAVLAANSNQIEAEWIEQYEPGVYITLMALKDGTRDLKRVRFSRRRFGEHQAETWWSENRERVYERYNVRSTDKSSGQATHKAEGATSPVSQS | 1222 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere01g0905 | 1222 | SMART | fyve_4 | 725 | 794 | IPR000306 | GO:0046872 | |
Dere01g0905 | 1222 | CDD | FYVE_like_SF | 736 | 789 | - | - | |
Dere01g0905 | 1222 | Coils | Coil | 982 | 1002 | - | - | |
Dere01g0905 | 1222 | MobiDBLite | consensus disorder prediction | 254 | 332 | - | - | |
Dere01g0905 | 1222 | MobiDBLite | consensus disorder prediction | 1199 | 1222 | - | - | |
Dere01g0905 | 1222 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 676 | 723 | IPR000408 | - | |
Dere01g0905 | 1222 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 622 | 671 | IPR000408 | - | |
Dere01g0905 | 1222 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 453 | 503 | IPR000408 | - | |
Dere01g0905 | 1222 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 570 | 617 | IPR000408 | - | |
Dere01g0905 | 1222 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 401 | 449 | IPR000408 | - | |
Dere01g0905 | 1222 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 507 | 556 | IPR000408 | - | |
Dere01g0905 | 1222 | SUPERFAMILY | RCC1/BLIP-II | 338 | 728 | IPR009091 | - | |
Dere01g0905 | 1222 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 387 | 397 | IPR000408 | - | |
Dere01g0905 | 1222 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 675 | 726 | IPR000408 | - | |
Dere01g0905 | 1222 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 546 | 556 | IPR000408 | - | |
Dere01g0905 | 1222 | Pfam | Pleckstrin homology domain | 117 | 225 | IPR001849 | - | |
Dere01g0905 | 1222 | Coils | Coil | 926 | 967 | - | - | |
Dere01g0905 | 1222 | CDD | PH_PLC_plant-like | 114 | 226 | - | - | |
Dere01g0905 | 1222 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 159 | 998 | - | - | |
Dere01g0905 | 1222 | MobiDBLite | consensus disorder prediction | 254 | 331 | - | - | |
Dere01g0905 | 1222 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 401 | 452 | IPR000408 | - | |
Dere01g0905 | 1222 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 733 | 801 | - | - | |
Dere01g0905 | 1222 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 508 | 559 | IPR000408 | - | |
Dere01g0905 | 1222 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 310 | 560 | - | - | |
Dere01g0905 | 1222 | SUPERFAMILY | PH domain-like | 115 | 225 | - | - | |
Dere01g0905 | 1222 | Pfam | FYVE zinc finger | 727 | 793 | IPR000306 | GO:0046872 | |
Dere01g0905 | 1222 | SUPERFAMILY | FYVE/PHD zinc finger | 727 | 799 | IPR011011 | - | |
Dere01g0905 | 1222 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 571 | 622 | IPR000408 | - | |
Dere01g0905 | 1222 | ProSiteProfiles | BRX domain profile. | 1142 | 1197 | IPR013591 | - | |
Dere01g0905 | 1222 | PRINTS | Chromosome condensation regulator RCC1 signature | 403 | 419 | IPR000408 | - | |
Dere01g0905 | 1222 | PRINTS | Chromosome condensation regulator RCC1 signature | 670 | 691 | IPR000408 | - | |
Dere01g0905 | 1222 | PRINTS | Chromosome condensation regulator RCC1 signature | 453 | 469 | IPR000408 | - | |
Dere01g0905 | 1222 | PRINTS | Chromosome condensation regulator RCC1 signature | 494 | 510 | IPR000408 | - | |
Dere01g0905 | 1222 | PRINTS | Chromosome condensation regulator RCC1 signature | 510 | 524 | IPR000408 | - | |
Dere01g0905 | 1222 | PRINTS | Chromosome condensation regulator RCC1 signature | 612 | 630 | IPR000408 | - | |
Dere01g0905 | 1222 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 561 | 732 | - | - | |
Dere01g0905 | 1222 | MobiDBLite | consensus disorder prediction | 1198 | 1222 | - | - | |
Dere01g0905 | 1222 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 623 | 674 | IPR000408 | - | |
Dere01g0905 | 1222 | MobiDBLite | consensus disorder prediction | 885 | 919 | - | - | |
Dere01g0905 | 1222 | Pfam | Transcription factor BRX N-terminal domain | 977 | 1012 | IPR027988 | - | |
Dere01g0905 | 1222 | Gene3D | - | 564 | 739 | IPR009091 | - | |
Dere01g0905 | 1222 | Gene3D | - | 275 | 563 | IPR009091 | - | |
Dere01g0905 | 1222 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 453 | 507 | IPR000408 | - | |
Dere01g0905 | 1222 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1141 | 1196 | IPR013591 | - | |
Dere01g0905 | 1222 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 740 | 799 | IPR013083 | - | |
Dere01g0905 | 1222 | Gene3D | - | 115 | 231 | IPR011993 | - | |
Dere01g0905 | 1222 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 494 | 504 | IPR000408 | - | |
Dere01g0905 | 1222 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 731 | 793 | IPR017455 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere01g0905 | Dere-ChrDere01 | 18436492 | 18445415 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere01g0905 | 1125 | 1213 | Major Intrinsic Protein MIP | AT1G31880 | 40.449 | 7.58e-14 | 72.8 |