Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0905 ATGCAAAATCCTTTTCCTTTAAGCCATCAATTGTCATCTATATCTGCGGAAGAATCCGCACTTGCATTTCACCAACCGCCATACTCTTTTCGGCTCCGATTCTCGCACTTTCTGAGTTTTTCTCCCTCCTTTGTCTCCTCAACCCGGTTTGGCGACGCCGGAGCCTGCATTTGTTGCCGGAATTTCTCTTCCACAACCGTTCGTGGGCCGTGGACCATCACTACCTTTCGGAGAACCCGCTTCTACCTCGTCCGAATACATGCGATCGCAGAGGGTGGTGGCGTTTTCGTCAGTTTCTCACATGGAATGGCAGATCTTGCTAGCTACGGTAATGCCGACCGTGATATCGAGCAGGCACTGATTGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCGTTTAGACTTTCCAATGATGAATCATCTCTAGTTTGGATATCAAGTGGTGAAGAAAGACGTTTGAAGCTATCTTTAGTCTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTATCTCCGTCCTGAGAAGGATTATCTGTCTTTTTCCCTTATTTATAACAACGGAAAGAGGTCCCTTGATCTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAATCACTGATATCCTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAATGATGGGGGCCTCTATCTTGATGATAACAGAGACTTGACTTCAAATCGTGCAAGTGGAAGTTCGGTTAGTACTTCACAAGATATTAGCTCTCCTGACGTTTCTGTGAGTCTTAATTCAAATTCTTCTCCAAAGTCCTTTCAGCCTGAGAATACTGCTAATTCTGAAAGGTCACATGCAACATCAGACCCAACAAATATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGGGTTAGTGTTTCAAGTGCCCCCAGTACATCCAGTCATGGGTCTGCACCAGATGATTGTGATGCTCTTGGGGATGTATACATATGGGGAGAGGTAATCTGTGAGAACATTGTGAAAGTTGGAGCTGATAAAAATGCCAGTTATTTTAGCCCAAGGGCAGATGTACTTGCCCCTAGACCACTGGAATCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAGGAATGTAATTCAACCCCGTTTAGTTGAAGCATTGGCATTTACAATTGTTAATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTATTACAATGGCTGGGGAACTATATACTTGGGGTGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGCACTGATATTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTAGAGGGACTTCAGGTTTCTTCAGTCACTTGTGGTCCATGGCACACGGCCTTGGTAACTTCAAGCGGGCAGCTTTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCACGGAGATAGGGAAAGTGTTTTTAATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACAATAGCTGTAGCATGTGGAGTGTGGCATACTGCAGCTGTGGTAGAAGTTATAGTAACACAATCCAGTGCAAGTGTTTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCCCGGCTTAAACCAACTTGCGTGCCTTCACTTATTGACTACAATTTTTATAAAATTGCTTGTGGGCACAGCTTGACAGTTGGCCTGACAACCTCAGGACATGTTTTTACAATGGGTAGCACTGTTTATGGTCAACTTGGGAATCCTCTGTCTGATGGAAAGCTGCCCTGCTTGGTTGAAGACAGGCTTGCAGGAGAATCTGTTGAAGAAATTGCATGCGGTGCATATCATGTTGCAGTTTTAACATCTAAAAATGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGGTTGGGTCACGGAGATGTTGAAGATAGGAAAATACCAACTTTGGTTGAAGCTTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAATGGGTATCAGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTCGTACACTGCCATTCCTGCAGTTCAAAGAAAGCATTAAGAGCATCTCTGGCTCCTAATCCTGGCAAGCCATATCGAGTTTGTGATTCTTGTTATGCAAAACTAAACAAGGTAGCCGAAGCTGGCAGTAATATTAGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGAAAGGTTGGATAAGTCTGAGATAAGAGTGTCCAAGGTGGTTCCTTCTAATATGGATTTGATAAAGCAGCTCGATAGTAAAGCAGTCAAACAAGGGAAGAAGGCTGATACTTTTGCCCTAGTTCGCACCTTGCAGGCACCTTCATTGCTGCAGCTGAAAGATGTGGTCTTGTCTACTGCTGTTGATCTGAGACAAACAGCTCCAAGACCAATTCTTGCACCATCTGGAGTAAGTTCCAGATCTGTATCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCTGCTACACCTATTCCAACCACGTCTGGACTTTCCTTATCCAGAAGCATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCTGAAGCTACGTTCTCAGGTTGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATTGGAGCTTCAAAGTTCAGCAAGGAAAACTCAGGAAGCTAGGGCACTTGCTGCTGAGGAGTCTGCTAAATCTAGAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCGCAGCTCAAAGATCTGGCCGAGAGGCTTCCTCCTGGAGCTAACGATGCTGAGAACATCAGACCAGCTTACCTACCAAATGGTCCGGAGTTAAATGGCATCCACTATCCGGATTCAAATGGGGAGCTTCACTCCCGAGCAGAGTCAATCAGCGCCTATAGCTTGGCCTCTGTAGGACTTGAATCATCTGTGTCAAATAGAAGAGAGGGGAATTTGTCTGGAACCTATGGAACTAATCTCTACCAGCAAAACCGGCAGCTTGTGAACTCCAATGGGACTGATGAACACCCAGATGTAAAATTGCCAAATGGTGGCGTGACTCACACAAGCAACAATGGCATGTCAGATACCGTTGATGGCAGGGTTTCAGGACCTTTACAAGATGGTGAGAGCAGTTTGAGATCGGGGGATGCTGTACTGGCAGCTAATAGTAATCAAATTGAGGCCGAATGGATTGAACAGTACGAACCTGGTGTGTATATAACACTCATGGCCCTGAAAGATGGAACGCGAGATCTAAAACGAGTTCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCAGAGAACCGTGAGAGGGTATATGAACGGTACAATGTTCGGAGCACTGACAAATCTTCAGGCCAAGCTACTCATAAGGCAGAGGGTGCTACTTCACCTGTTTCCCAATCTTAG 3669 0.4503 MQNPFPLSHQLSSISAEESALAFHQPPYSFRLRFSHFLSFSPSFVSSTRFGDAGACICCRNFSSTTVRGPWTITTFRRTRFYLVRIHAIAEGGGVFVSFSHGMADLASYGNADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLVWISSGEERRLKLSLVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKSLISSGQGGRSKIDGWNDGGLYLDDNRDLTSNRASGSSVSTSQDISSPDVSVSLNSNSSPKSFQPENTANSERSHATSDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICENIVKVGADKNASYFSPRADVLAPRPLESNVVLDVHHIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGRNVIQPRLVEALAFTIVNFVACGEFHTCAITMAGELYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVSSVTCGPWHTALVTSSGQLFTFGDGTFGVLGHGDRESVFNPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPLSDGKLPCLVEDRLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRASLAPNPGKPYRVCDSCYAKLNKVAEAGSNIRRNAMPRLSGENKERLDKSEIRVSKVVPSNMDLIKQLDSKAVKQGKKADTFALVRTLQAPSLLQLKDVVLSTAVDLRQTAPRPILAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSLSRSIADSLKKTNELLNQEVLKLRSQVESLRQRCELQELELQSSARKTQEARALAAEESAKSRAAKEVIKSLTAQLKDLAERLPPGANDAENIRPAYLPNGPELNGIHYPDSNGELHSRAESISAYSLASVGLESSVSNRREGNLSGTYGTNLYQQNRQLVNSNGTDEHPDVKLPNGGVTHTSNNGMSDTVDGRVSGPLQDGESSLRSGDAVLAANSNQIEAEWIEQYEPGVYITLMALKDGTRDLKRVRFSRRRFGEHQAETWWSENRERVYERYNVRSTDKSSGQATHKAEGATSPVSQS 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0905 1222 SMART fyve_4 725 794 IPR000306 GO:0046872
Dere01g0905 1222 CDD FYVE_like_SF 736 789 - -
Dere01g0905 1222 Coils Coil 982 1002 - -
Dere01g0905 1222 MobiDBLite consensus disorder prediction 254 332 - -
Dere01g0905 1222 MobiDBLite consensus disorder prediction 1199 1222 - -
Dere01g0905 1222 Pfam Regulator of chromosome condensation (RCC1) repeat 676 723 IPR000408 -
Dere01g0905 1222 Pfam Regulator of chromosome condensation (RCC1) repeat 622 671 IPR000408 -
Dere01g0905 1222 Pfam Regulator of chromosome condensation (RCC1) repeat 453 503 IPR000408 -
Dere01g0905 1222 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Dere01g0905 1222 Pfam Regulator of chromosome condensation (RCC1) repeat 401 449 IPR000408 -
Dere01g0905 1222 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Dere01g0905 1222 SUPERFAMILY RCC1/BLIP-II 338 728 IPR009091 -
Dere01g0905 1222 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 387 397 IPR000408 -
Dere01g0905 1222 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 675 726 IPR000408 -
Dere01g0905 1222 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 546 556 IPR000408 -
Dere01g0905 1222 Pfam Pleckstrin homology domain 117 225 IPR001849 -
Dere01g0905 1222 Coils Coil 926 967 - -
Dere01g0905 1222 CDD PH_PLC_plant-like 114 226 - -
Dere01g0905 1222 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 159 998 - -
Dere01g0905 1222 MobiDBLite consensus disorder prediction 254 331 - -
Dere01g0905 1222 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 401 452 IPR000408 -
Dere01g0905 1222 FunFam Putative E3 ubiquitin-protein ligase HERC1 733 801 - -
Dere01g0905 1222 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
Dere01g0905 1222 FunFam PH, RCC1 and FYVE domains-containing protein 1 310 560 - -
Dere01g0905 1222 SUPERFAMILY PH domain-like 115 225 - -
Dere01g0905 1222 Pfam FYVE zinc finger 727 793 IPR000306 GO:0046872
Dere01g0905 1222 SUPERFAMILY FYVE/PHD zinc finger 727 799 IPR011011 -
Dere01g0905 1222 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Dere01g0905 1222 ProSiteProfiles BRX domain profile. 1142 1197 IPR013591 -
Dere01g0905 1222 PRINTS Chromosome condensation regulator RCC1 signature 403 419 IPR000408 -
Dere01g0905 1222 PRINTS Chromosome condensation regulator RCC1 signature 670 691 IPR000408 -
Dere01g0905 1222 PRINTS Chromosome condensation regulator RCC1 signature 453 469 IPR000408 -
Dere01g0905 1222 PRINTS Chromosome condensation regulator RCC1 signature 494 510 IPR000408 -
Dere01g0905 1222 PRINTS Chromosome condensation regulator RCC1 signature 510 524 IPR000408 -
Dere01g0905 1222 PRINTS Chromosome condensation regulator RCC1 signature 612 630 IPR000408 -
Dere01g0905 1222 FunFam PH, RCC1 and FYVE domains-containing protein 1 561 732 - -
Dere01g0905 1222 MobiDBLite consensus disorder prediction 1198 1222 - -
Dere01g0905 1222 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 623 674 IPR000408 -
Dere01g0905 1222 MobiDBLite consensus disorder prediction 885 919 - -
Dere01g0905 1222 Pfam Transcription factor BRX N-terminal domain 977 1012 IPR027988 -
Dere01g0905 1222 Gene3D - 564 739 IPR009091 -
Dere01g0905 1222 Gene3D - 275 563 IPR009091 -
Dere01g0905 1222 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 507 IPR000408 -
Dere01g0905 1222 Pfam Transcription factor regulating root and shoot growth via Pin3 1141 1196 IPR013591 -
Dere01g0905 1222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 799 IPR013083 -
Dere01g0905 1222 Gene3D - 115 231 IPR011993 -
Dere01g0905 1222 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 494 504 IPR000408 -
Dere01g0905 1222 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 731 793 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0905 Dere-ChrDere01 18436492 18445415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0905 1125 1213 Major Intrinsic Protein MIP AT1G31880 40.449 7.58e-14 72.8