Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0904 ATGGCGAGGGAGAAGCTGTACATCACCGTTCCGAGCCTCTTCCGATGCCCTATCTCGATGGACGTGATGCGGTCTCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCTCCAGCATCCAGCACTGGCTCGACTCCGGCCACCACACCTGTCCCGCCACCATGCAAGTCCTCTCCTCCAAAGACTTCATTCCCAACCTCACCCTCCGCCGCCTCATGCAGAACCTCAAGCTCTCCCCCTCCTCCCTCTCCTCTCCTTCCAATGTCTCCACCGAACAAGTCAGAACTCTGATCCATGCAATTCAACACGACAATGACGACGTCGCTGTCTCGCTTTCCAAGATCGCGGAATTCGCCGCTTACTCCGACGAGAATCGGCATTTCTTGTCGAATTTCGCGGGTTTGGACTCGGCACTCGTTCGTATTCTCAGCAGGAAGTGTTCGGACATTGAGATTTCAGAAACGGTGGTCAGAGTTTTGAGTTCGATTATGCGGGAGAACGGAATCAAAGAACGAATTCGCGAGATGATTTTCGATGCTAATCGAGATTGCTTATCTTCGTTCGTCTCGATTTTACATAGCGGAAGCTCTCTGACCTCGAAGGTCGAATCGGCGACGGTTTTAGAATCGCTCGCCGGAGATGTTCAGTCAAAACGGTCAATCGCCGAAACGCATGGCCTTTTGTCCGCACTCGTTAACGTACTGCGCGCAGAAAACAATTCCTCGTCGGAACTATGCGACGCCGTTTTGTCGTTATTAATAGCCGTTTCAGTGACTCAGTCAACCAAAAGCGAACTCCTCCGGTTCGGACTCGTTCCGGTTCTCGCCAAAACGCTACAGAACCCATCATCGTCAACCTCTAGCAATTCAACTATCGAGAGGTCCCTCAAATTACTGGCCATGCTTTCGACGTGTGCGGGCGGAAGGTACGCCATCGCCGACGAGCCGAGGTGCGTGGAGGCGGTGGCAGAGAGGCTCGTTAAGGCGTCGAAGGCGGCAACGGAGGACGCGGTGGTGCTTCTGTGGGGCATGTGCTGTATCTGTAAGAATGGGAAGGTACAGGAAAAGGTGGTGAAGAGCAATGGCGTGACGAAGATACTGATTGTTCTACAAAGAGATTGCGAAGAGCATGTGAGGAAGATGTGTGTGGAATTAGTTAAGGTTCTGAGGGCTGTGTCGAAGGATGTGTTGGGTAGCTACGAGACGAAAACCACTCATATAAAGCCATGCTAG 1233 0.5272 MAREKLYITVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQHWLDSGHHTCPATMQVLSSKDFIPNLTLRRLMQNLKLSPSSLSSPSNVSTEQVRTLIHAIQHDNDDVAVSLSKIAEFAAYSDENRHFLSNFAGLDSALVRILSRKCSDIEISETVVRVLSSIMRENGIKERIREMIFDANRDCLSSFVSILHSGSSLTSKVESATVLESLAGDVQSKRSIAETHGLLSALVNVLRAENNSSSELCDAVLSLLIAVSVTQSTKSELLRFGLVPVLAKTLQNPSSSTSSNSTIERSLKLLAMLSTCAGGRYAIADEPRCVEAVAERLVKASKAATEDAVVLLWGMCCICKNGKVQEKVVKSNGVTKILIVLQRDCEEHVRKMCVELVKVLRAVSKDVLGSYETKTTHIKPC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0904 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 81 IPR013083 -
Dere01g0904 410 SUPERFAMILY ARM repeat 91 386 IPR016024 -
Dere01g0904 410 Pfam U-box domain 10 72 IPR003613 GO:0004842|GO:0016567
Dere01g0904 410 SUPERFAMILY RING/U-box 6 77 - -
Dere01g0904 410 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Dere01g0904 410 Gene3D - 82 397 IPR011989 -
Dere01g0904 410 CDD RING-Ubox_PUB 11 63 IPR045210 -
Dere01g0904 410 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Dere01g0904 410 FunFam RING-type E3 ubiquitin transferase 10 82 - -
Dere01g0904 410 PANTHER WDSAM1 PROTEIN 9 394 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0904 Dere-ChrDere01 18412699 18413931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0904 1 409 U-box Gene Family AT5G09800 42.959 7.84e-93 283