Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0895 ATGCAGACGATGGAGCACTTAGTGAAGACTTCCTCTCCTGTGGTTTCTAATGGCAGTTTCAGAGAAGATAAGAGCATGATGACGAGAAGAGAAACTGTGGAGTTGGCCATTACAGAACCTGATTCAGACGACGAAGTAACTGGGGACAAGGACGCTCAAATGGCTAGTGTGCTTGCTCGCTACAAGAAGACACTCATTGAGAGAACAACCTACCATCTGGGTTACCCTTATAATTTGGAGTTCGATTATGGAAGTTTAGCACAGTTTCAAGATTTCATGATCAACAATCTTGGGGACCCATTCATAGAGAGCAATTACGGTGTACACTCGAGAGCCTTCGAAGTTGGTGTGCTAGATTGGTTTGCACGTCTCTGGGAAGTCCACAAGAATGAGTATTGGGGTTACGTCACTAATTGTGGAACAGAAGGCAATCTTCATGGAATTTTAGTCGGGAGAGAAGTGTTTCCTGATGGAGTTCTATATGCCTCACAAGACTCGCATTATTCCATTTTCAAAGCAGCAAGAATGTATAGAATGGAGTGTATCAAAGTTAGCACTTTGTTGTCTGGTGAGATTGACTGTGCAGATTTTAAGTCCAAATTGCTTGCTAACAAGCACAAGCCGGCAATCATCAACGTAAATATAGGGACAACTATGAAAGGAGCTATTGATGATCTAGATCATATAATAAAATCTCTCGAAGAAAGCGACTTTAGCCGTGATCGATTCTATATTCACTGTGATGGAGCATTATTTGGACTCATGGTTCCTTTTCTTAAACGTGCACCGAAAGTAACATTCAAGAAACCAATAGGAAGTATAAGTGTTTCAGGGCACAAGTTCGTGGGGTGCCCCATTCCCTGTGGGGTACAAATAACGCGTTTAGAGCACATTCGCGTCCTCTCAAACAACATAGATTATCTTGCTTCAAGGGATGCGACCATCATGGGAAGCAGGAACGGCCACGCCCCGATCTTTCTGTTGTACGCACTCAACAAGAAGGGTTTCAGAGGGTTCCAGAAAGAGGTCCTAAAGTGCCTCAGAAATGCACTTTACTTGAAGGGGTGCCTTAGAAAAGCTGGGATCAGTGTGATGCTGAATAGTCTGAGCAACACCGTTGTGTTTGAGAGGCCTCGAGATGAAGAGTTTGTTCGCAAGTGGCAGCTCGCGTGCCAAGGGAATATAGCACATGTGGTAGTGATGCCTAGTGTTACTGTTGAGAAGCTGAATGCCTTTGTGAGCGAGCTGGCTGAGAAACGTACTAGTTGGTACAAGGATGGGAAAGTTAAGCCCCCTTGTGTTGAAAACAATGTTGGTAAGGAGAATTGTGTGTGTACTCTACATAAAAATAAGGCGTGA 1359 0.44 MQTMEHLVKTSSPVVSNGSFREDKSMMTRRETVELAITEPDSDDEVTGDKDAQMASVLARYKKTLIERTTYHLGYPYNLEFDYGSLAQFQDFMINNLGDPFIESNYGVHSRAFEVGVLDWFARLWEVHKNEYWGYVTNCGTEGNLHGILVGREVFPDGVLYASQDSHYSIFKAARMYRMECIKVSTLLSGEIDCADFKSKLLANKHKPAIINVNIGTTMKGAIDDLDHIIKSLEESDFSRDRFYIHCDGALFGLMVPFLKRAPKVTFKKPIGSISVSGHKFVGCPIPCGVQITRLEHIRVLSNNIDYLASRDATIMGSRNGHAPIFLLYALNKKGFRGFQKEVLKCLRNALYLKGCLRKAGISVMLNSLSNTVVFERPRDEEFVRKWQLACQGNIAHVVVMPSVTVEKLNAFVSELAEKRTSWYKDGKVKPPCVENNVGKENCVCTLHKNKA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0895 452 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 273 294 IPR021115 GO:0016831
Dere01g0895 452 Pfam Pyridoxal-dependent decarboxylase conserved domain 159 361 IPR002129 GO:0016830|GO:0019752|GO:0030170
Dere01g0895 452 SUPERFAMILY PLP-dependent transferases 57 422 IPR015424 -
Dere01g0895 452 PANTHER - 22 449 - -
Dere01g0895 452 Gene3D - 87 331 IPR015421 GO:0003824
Dere01g0895 452 Gene3D Aspartate Aminotransferase, domain 1 332 421 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0895 Dere-ChrDere01 18163366 18166495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0895 215 360 Calmodulin-binding Proteins AT1G65960 27.742 1.47e-07 51.6