LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g0884	ATGCGCATAAAAATCCTTTCAGTATTCACCTTGTTTTCTGATATTCTTTTCTTTGCTGTAATTTGCTTAGAGAAGGACTTAGCCTCTCCTCTCTCAGGCTATATGCAGACCAGTGTAACAGAGGCCTCCTCCGCCGACGCCGCGATGGCCGTCGAGGTGGCCGAAGCACCCTCGCCACCGCCAGCGGAAGCCACGGCTCCCGAAGGAGGAGCCGACGTCAACGGTGGCGGCGAGATCATAATTGGGATGGATGCAACGACCACTTCATCAGGTGAGGGTGACAAGATCAACGGTGGAGGGAACCGGTGGCCCCGCCCGGAGACTTTGGCTCTGTTGAAGATAAGGTCCGATATGGACGCTGTGTTTCGAGATTCAAGTCTTAAAGGCCCACTCTGGGAAGAAGTTTCAAGGAAACTAGGAGAACTTGGTTATACGCGAAGCGCAAAGAAGTGCAAGGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGATAGCAGAAGTGCCAAAGCAGAAGGAAAGACAAAAACCTATAGATTTTTCGATCAATTACAAGCCCTTGAATCTCGATTTACTCTCTCTCACTCTCACTCTCAAACTCAATCCCAATCTCACCCTCCAAATCCACCATATCCACAACCTTCACATTTGACATCAAATACACTAACCTCATTGCCATTCCCAGCAAGGCCCGGTGATCATTCATCAACCACCATTTCTTATATCACCACCACCACCACGCCCACCGCAACTACTACGGTTCCATCGGCGAATCCTTCGGTGCCGACCGTGAACTTTTTTGCAACCGCCACCATTACCTCTACCTCGTCGTCCACCGCGTCCGACGAAGACTTGGAAGAGAGGTACAGGAAGAAGAGGAAATGGAAGGACTACTTCAGAAGGCTCACCAGGCAGGTCCTGGCCAGGCAGGAGGAGATGCAGAAGAGGTTCCTGGACGCCATAGATAAACGAGAGTGCGAGCGCGTGGCTCAGCTGGAAACCTGGAGGATGCAGGAGATGGCCAGGATCAATCGGGAGCACGAGATCCTCGTCCAGGAAAGGTCCACCGCAGCCGCTAAAGACGCAGCCCTCATCGCATTCTTACAGAAGTTGTCCGGCGGAACACCGCAACCGCAACCACCACCGCCACCTCCACTTCCACTCGTGTCTCAGTTGCAACCACAGCAACAGCAGCAAAGTCAGCAGCCCCAATTGGTAGTGATGCCGAACAATAATAATGGTAATTACGAGAAGTTTGAAATCCAGAAAATCAATTATAACAATAACAGTAGTAATGTTGTTTGTGGTGGTGGTGGGGGTGATACTTCTTCGCGGTGGCCGAAGGCGGAGGTACATGCGTTGATAAGGCTGAGGACTAGTCTGGACGCGAAGTATCAGGACAACGGACCTAAGGCTCCACTGTGGGAGGAGATATCGAGTGGAATGCAGAGGTTGGGGTACACTAGGAGCGCCAAGAGGTGCAAAGAGAAGTGGGAGAACATCAACAAATACTTCAAGAAGATAAAGGAAAGCAACAAGCATAGGCGTGACGATAGTAAGACTTGTCCTTACTTCAATGAGCTCGATGCTTTGTACAAAGAGAAGAGCAAAACACAGAATAACAACCCCTTCGGTTCGTTTGATCACAATGTGGAGCCATTGATGGTGCAACCAGAGCAGCAATGGAGGCCTCCCACTCAAGAAGTAAGTGAAAATGCAAGTCAATATCAAGAATGTGAAGAAGAAGAAGATGATGATAACGACGGTGGTGGTGGTGAAGTGGAAGATCGAGGAAGTGTGGATTTAGAAGATGAAGAAGAAGGAGGAGGAGGTGGAGATTATGAGATCAATAAGGCGACAAATAAACTTTCTCCAGTGGACACCGTTGAATGA	1899	0.495	MRIKILSVFTLFSDILFFAVICLEKDLASPLSGYMQTSVTEASSADAAMAVEVAEAPSPPPAEATAPEGGADVNGGGEIIIGMDATTTSSGEGDKINGGGNRWPRPETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLGELGYTRSAKKCKEKFENVYKYHKRTKDSRSAKAEGKTKTYRFFDQLQALESRFTLSHSHSQTQSQSHPPNPPYPQPSHLTSNTLTSLPFPARPGDHSSTTISYITTTTTPTATTTVPSANPSVPTVNFFATATITSTSSSTASDEDLEERYRKKRKWKDYFRRLTRQVLARQEEMQKRFLDAIDKRECERVAQLETWRMQEMARINREHEILVQERSTAAAKDAALIAFLQKLSGGTPQPQPPPPPPLPLVSQLQPQQQQQSQQPQLVVMPNNNNGNYEKFEIQKINYNNNSSNVVCGGGGGDTSSRWPKAEVHALIRLRTSLDAKYQDNGPKAPLWEEISSGMQRLGYTRSAKRCKEKWENINKYFKKIKESNKHRRDDSKTCPYFNELDALYKEKSKTQNNNPFGSFDHNVEPLMVQPEQQWRPPTQEVSENASQYQECEEEEDDDNDGGGGEVEDRGSVDLEDEEEGGGGGDYEINKATNKLSPVDTVE	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g0884	632	CDD	GT1	446	511	-	-
	Dere01g0884	632	MobiDBLite	consensus disorder prediction	377	392	-	-
	Dere01g0884	632	Pfam	Myb/SANT-like DNA-binding domain	446	533	IPR044822	-
	Dere01g0884	632	Pfam	Myb/SANT-like DNA-binding domain	101	189	IPR044822	-
	Dere01g0884	632	CDD	GT1	101	166	-	-
	Dere01g0884	632	ProSiteProfiles	Myb-like domain profile.	101	159	IPR001005	-
	Dere01g0884	632	FunFam	Trihelix transcription factor GT-2	103	164	-	-
	Dere01g0884	632	SMART	sant	99	161	IPR001005	-
	Dere01g0884	632	SMART	sant	444	506	IPR001005	-
	Dere01g0884	632	MobiDBLite	consensus disorder prediction	217	241	-	-
	Dere01g0884	632	ProSiteProfiles	Myb-like domain profile.	446	504	IPR001005	-
	Dere01g0884	632	MobiDBLite	consensus disorder prediction	194	241	-	-
	Dere01g0884	632	Gene3D	-	448	509	-	-
	Dere01g0884	632	Gene3D	-	103	164	-	-
	Dere01g0884	632	MobiDBLite	consensus disorder prediction	577	593	-	-
	Dere01g0884	632	MobiDBLite	consensus disorder prediction	563	632	-	-
	Dere01g0884	632	PANTHER	FI21293P1	77	583	-	-
	Dere01g0884	632	MobiDBLite	consensus disorder prediction	374	405	-	-
	Dere01g0884	632	FunFam	Trihelix transcription factor GT-2	448	509	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g0884	Dere-ChrDere01	17966225	17968748	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g0884	93	563	Trihelix Transcription Factor Family	AT1G76890	46.731	2.42e-134	404

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Dere01g0884		Myb_DNA-bind_4	1.6e-17	CL0123