Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0883 ATGCTGGGGGACTCATCATCATCAGCTGTGTTAGGAGGTGGTGGCGGTGGCGCCTCTTCTGATGCAGTGGCGCCAGCGGTCGTGGCAGCTGCTGCATCGGCGCCGGCCCCAGCCGCAGCAGCTGGGACTACGTCGGCCCATGACGGTGGCGAGTCTGTCGCGGGGGCGGCGGCAGCGGCTGGATCAAATTCGGGGGACGAAGATGGTAGGGGTAGAGGGGACGAAGGTGACCGGAGCTTCGGCGGCAACCGGTGGCCTCGCCAGGAAACTTTGGCGCTCTTGAAGATACGCTCAGATATGGACGTGGCGTTTCGAGATGCTAGTGTTAAAGGCCCCCTCTGGGAAGATGTTTCCAGGAAGTTGGCAGAGCTTGGGTATCACAGAAGCGCCAAGAAATGCAAAGAGAAGTTCGAGAATGTGTACAAGTACCACAAGAGAACAAAAGAAGGCCGAACTGGGAAATCAGAAGGCAAAACTTATCGTTTCTTCGATCAATTAGAAGCACTTGATCATCAAAACCATCCTCCTCCGCCTCCTCCTTCTACTCACACAATTCAATCCCCACCACCATCAAAGCCACCACAGCTATTAGCAGCAATACCTGCAACTCCAGTATCAGTGGTAGCAACAACTCCATTATCATCCACAAGCATTATTCCTCCTCATGTCACTACTGTTCCATCAACAATTACACTCCCTACCACTGCTTCTCAATCTAATATCGTCACTACACCAATGAATCATCCTCCCTACAATTTCCCACCACCACCATCATCATCGACAGCAAACCCTACCCTCCCTTCTTTCCCCTCCGATCTCTTGTCCAATTCAACGTCGTCCTCGACTTCCTCCGACGAATCCATAGAACGGCGGCAACGGCGGAAGCGGAAGTGGAAGGACTTCTTCGGGAGGCTGACAAAGGAGGTGATAGAGAAGCAGGAGGAAATGCAGAAGAGGTTCCTCGAAGCAATAGAGAAGCGTGAACATGAGAGGATGGTTCGCGAAGAGGCTTGGATAAACAAGGAGATGGAGAGAATCAATCGAGAGCGGGAAATATTGGCGCAGGAAAGATCTATAGCAGCCGCGAAAGACGCAGCTGTAATGGCATTATTGCAGAAGACAGCCGAACAGCAGAATCTCGGACTGCCATTGAATAATATCAATATTCCTCCTCCACCGCCGCCGGCACCTACCGTGCAACCGCAAGCACAATCGGTGTCCGCTCCGGTGGCGGCTCCGGCACAGCCGCAGACCCAGCCGGCTGCAGTAACAAATATGGAGATTGTAGCAACTGATAATAACAATAATAATGGGGAGACTAATTTGATGACACCGAGCTCGTCCAGGTGGCCGAAAGTGGAGGTTCAGGCATTGATAAAGCTGCGAACGAGCATGGACGAGAAGTACCAAGAGAACGGGCCCAAAGGGCCGTTGTGGGAGGAGATCTCGGCGGCGATGCGGAGGCTTGGGTACAACCGGAACGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGAGAGCAACAAGAAGAGGCCGGAAGATTCCAAGACCTGTCCGTATTTTCACCAGCTGGATGCTCTATACAGAGAGAAGAACAAGCTCGAGATGATCAATCCGTTATCCACGGCGAACAATAATTTGATGAAGCCAGAGAATAATGACGCCATGGCGGCCACGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCTCCGCAGCAGAAGGCAGCGGGGGAGAATAATAACAATAATAATAATAATAATAACAACGTGGAGGTCGATGACGAGGAGGAAGAAGAAGATATGGATGAAGAGAAGGATATCGGGGAGGACGATGAAGAAGATGAAGAGGAGGAAGGAGGTGGTAATTACGAGATAGTGGCAAGCAAGCCAGCTTCAGTGAGTGCAGCTGAGTGA 1941 0.5209 MLGDSSSSAVLGGGGGGASSDAVAPAVVAAAASAPAPAAAAGTTSAHDGGESVAGAAAAAGSNSGDEDGRGRGDEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEDVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKTYRFFDQLEALDHQNHPPPPPPSTHTIQSPPPSKPPQLLAAIPATPVSVVATTPLSSTSIIPPHVTTVPSTITLPTTASQSNIVTTPMNHPPYNFPPPPSSSTANPTLPSFPSDLLSNSTSSSTSSDESIERRQRRKRKWKDFFGRLTKEVIEKQEEMQKRFLEAIEKREHERMVREEAWINKEMERINREREILAQERSIAAAKDAAVMALLQKTAEQQNLGLPLNNINIPPPPPPAPTVQPQAQSVSAPVAAPAQPQTQPAAVTNMEIVATDNNNNNGETNLMTPSSSRWPKVEVQALIKLRTSMDEKYQENGPKGPLWEEISAAMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKLEMINPLSTANNNLMKPENNDAMAATAPLMVRPEQQWPPQQKAAGENNNNNNNNNNNVEVDDEEEEEDMDEEKDIGEDDEEDEEEEGGGNYEIVASKPASVSAAE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0883 646 MobiDBLite consensus disorder prediction 172 197 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 248 263 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 169 197 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 33 86 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 67 82 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 581 598 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 240 295 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 599 630 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 577 646 - -
Dere01g0883 646 ProSiteProfiles Myb-like domain profile. 83 141 IPR001005 -
Dere01g0883 646 SMART sant 446 508 IPR001005 -
Dere01g0883 646 SMART sant 81 143 IPR001005 -
Dere01g0883 646 Gene3D - 85 146 - -
Dere01g0883 646 Gene3D - 450 511 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 1 21 - -
Dere01g0883 646 MobiDBLite consensus disorder prediction 264 285 - -
Dere01g0883 646 FunFam Trihelix transcription factor GT-2 450 511 - -
Dere01g0883 646 CDD GT1 448 513 - -
Dere01g0883 646 ProSiteProfiles Myb-like domain profile. 448 506 IPR001005 -
Dere01g0883 646 Pfam Myb/SANT-like DNA-binding domain 83 169 IPR044822 -
Dere01g0883 646 Pfam Myb/SANT-like DNA-binding domain 448 535 IPR044822 -
Dere01g0883 646 FunFam Trihelix transcription factor GT-2 85 146 - -
Dere01g0883 646 CDD GT1 83 148 - -
Dere01g0883 646 PANTHER FI21293P1 43 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0883 Dere-ChrDere01 17919758 17922586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0883 77 578 Trihelix Transcription Factor Family AT1G76880 55.899 1.16e-168 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere01g0883 Myb_DNA-bind_4 1.6e-22 CL0123