Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0879 ATGCTTGCTGGTTTAATACGACACCTTGGGCTCTGGGTCTGGATACCACTTCGCCGCAGAAGCAAGCTCAGGCGGGGAAGGATGTCGCACAGGAAGTTCGAACACCCCAGGCATGGTTCCCTAGGATTTCTCCCCAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGTGAAGGCATTCCCCAAGGATGACCCAACCAAGCCACCCAAGCTTACTGCCTTCTTGGGTTATAAGGCCGGCATGACTCACATTGTCAGAGAGGTTGAGAAACCAGGATCAAAACTTCACAAGAAGGAAACTTGTGAACCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGCGTTGTGGGTTATGTGAAAACTCCTCGTGGTCTTCGAACATTGAACACTGTATGGGCTCAGCATTTGAGTGAGGATGTGAGACGCAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCATTCACAAAGTACTCCAAGCAATTTGAATCTGAAGATGGGAAGAAAAACATTCAAGCTCAGCTTGACAAAATTAAGAAGTATGCATCTGTTGTCCGGGTTTTGGCTCACACTCAGATCAGAAAAGTGAAAGGGTTAAAGCAGAAGAAAGCACACCTCATGGAGATTCAGGTCAATGGTGGCACTATCGCACAGAAGGTGGACTATGCATACAATTTCTTTGAGAAGCAGGTTCCTGTTGATGCTGTATTCCAGAAGGATGAGATGATTGACCTCATTGGTGTAACAAAAGGTAAAGGGTATGAAGGTGTTGTCACTCGATGGGGTGTTACCCGCCTTCCCCGCAAGACTCACAGGGGTCTGAGGAAGGTAGCATGTATTGGTGCCTGGCATCCTGCCAGAGTTTCTTTCACAGTTGCCAGAGCTGGTCAGAATGGATACCACCACCGAACTGAGATGAACAAGAAGATTTACAAACTTGGCAAAGCTGGACAGGAGTCTCACACAGCTATTACTGAGTTCGACAGGACTGAGAAAGACATAACACCAATGGGTGGCTTTCCTCACTACGGTATTGTGAAGGATGACTATGTGATGATCAAGGGATGCTGTGTTGGTCCCAAGAAGAGGGTTATCACATTGCGTCAATCCCTGCTTAAGCAGACTTCACGCCTTGCTCTGGAGGAGATCAAGCTCAAGTTTATTGACACATCTTCAAAGTTCGGGCATGGCCGCTTCCAGACAACACAGGAGAAGCAAAAGTTCTTTGGACGTCTCAAGGCATAA 1251 0.4732 MLAGLIRHLGLWVWIPLRRRSKLRRGRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEDVRRRFYKNWCKSKKKAFTKYSKQFESEDGKKNIQAQLDKIKKYASVVRVLAHTQIRKVKGLKQKKAHLMEIQVNGGTIAQKVDYAYNFFEKQVPVDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAGQESHTAITEFDRTEKDITPMGGFPHYGIVKDDYVMIKGCCVGPKKRVITLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0879 416 FunFam 60S ribosomal protein L3 28 101 - -
Dere01g0879 416 FunFam 60S ribosomal protein L3 110 234 - -
Dere01g0879 416 FunFam 60S ribosomal protein L3 253 301 - -
Dere01g0879 416 ProSitePatterns Ribosomal protein L3 signature. 239 262 IPR019926 -
Dere01g0879 416 Gene3D Ribosomal protein L3, domain 3 28 301 IPR044892 -
Dere01g0879 416 Pfam Ribosomal protein L3 28 397 IPR000597 GO:0003735|GO:0005840|GO:0006412
Dere01g0879 416 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 28 411 IPR045077 GO:0003735|GO:0005840|GO:0006412
Dere01g0879 416 Gene3D - 110 234 - -
Dere01g0879 416 Gene3D Translation factors 71 412 - -
Dere01g0879 416 FunFam 60S ribosomal protein L3 71 168 - -
Dere01g0879 416 FunFam Ribosomal protein L3 292 416 - -
Dere01g0879 416 SUPERFAMILY Translation proteins 31 397 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0879 Dere-ChrDere01 17834263 17838921 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0879 28 414 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.822 0.0 701