Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g0872 ATGCGAGCGTCGAGTCCGTGTGTCCAAAGTCAGACGCTGTCTATAGGAAGCTATCGTTGTTTCTATTCTGGGGCTGTCGGATTATTGGAGAAAATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTGAGGCTTCCTGGCCATCATAGAGGGAAGTCACATAGCTCAGTGCATGAGTTGCGGGAACAGCCTCCTGAAATACAGAACAGCCGTTGGGCTAGCCTTCCACCAGAGCTTCTTCGCGATGTTATCAAAAGATTGGAAGTGAGTGAGAGTACATGGCCTGCTCGTAAACATGTAGTTGCTTGTGCTGCTGTATGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAGTTTTCTGGGAAGATTACTTTCCCTATATCCCTAAAACAGCCGGGATACAGGGACGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTAACATACCACCTTTTCCTTTGCCTTAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTGTCTGCGAAAAGGACTAGAAGAACTACGTGTACAGAGTATATTATGTCAATGGATGCAGACAACATATCAAGATCTAGTAGTACATACATTGGAAAACTGAGGTCAAATTTTCTCGGCACCAAATTTATAATCTATGATACACAGCCACCCTATAATAATACTCAGATGTCTCCACCTGGCCGAAGCCGTAGATTCTATTCGAAAAAGGTTTCTCCAAAAGTCCCTAGTGGCAGCTACAATATTGCCCAAGTCACCTATGAACTAAATGTGCTTGGTACTAGGGGACCACGCAGGATGCATTGCACCATGTACTCGATCCCTGCGTCATCTCTTGAGCCTGGTGGAACTGTTCCTGGCCAACCTGAGCTCCTTCCCCACTCGCTTGAGGATTCATTCCGGAGTATATCCTTCTCAAGATCGATTGACAATTCAACTGAGTTTAGCAGCTCAAGGTTCTCAGACATAATTGGTACCAGTAATGAAGAAGGGGAAGGAAAGGAGAGACCTCTAGTTCTTAAGAACAAGGCGCCTAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGGCGGGTGACTGTTGCCTCTGTCAAAAATTTTCAGTTGATTGCTGCAACTTCACAGCCTGCAGCCGGTGCTCCAACACCAGCACAGCCTACTCAGTCTGATCACGACAAGATTATTCTTCAGTTTGGCAAAGTTGGCAAGGACATGTTCACAATGGATTACCGATATCCCCTATCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1371 0.4566 MRASSPCVQSQTLSIGSYRCFYSGAVGLLEKMSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSHSSVHELREQPPEIQNSRWASLPPELLRDVIKRLEVSESTWPARKHVVACAAVCKSWREMCKEIVSSPEFSGKITFPISLKQPGYRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIMSMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNTQMSPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMYSIPASSLEPGGTVPGQPELLPHSLEDSFRSISFSRSIDNSTEFSSSRFSDIIGTSNEEGEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSQPAAGAPTPAQPTQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g0872 456 PANTHER TUBBY-RELATED 72 454 - -
Dere01g0872 456 Pfam Tub family 145 451 IPR000007 -
Dere01g0872 456 Gene3D Tubby Protein; Chain A 144 450 IPR025659 -
Dere01g0872 456 Gene3D - 78 132 - -
Dere01g0872 456 SUPERFAMILY Tubby C-terminal domain-like 133 456 IPR025659 -
Dere01g0872 456 ProSitePatterns Tub family signature 1. 377 390 IPR018066 -
Dere01g0872 456 PRINTS Tubby superfamily signature 377 393 IPR000007 -
Dere01g0872 456 PRINTS Tubby superfamily signature 434 456 IPR000007 -
Dere01g0872 456 PRINTS Tubby superfamily signature 200 216 IPR000007 -
Dere01g0872 456 PRINTS Tubby superfamily signature 265 292 IPR000007 -
Dere01g0872 456 PRINTS Tubby superfamily signature 216 240 IPR000007 -
Dere01g0872 456 PRINTS Tubby superfamily signature 359 376 IPR000007 -
Dere01g0872 456 PRINTS Tubby superfamily signature 413 432 IPR000007 -
Dere01g0872 456 SUPERFAMILY F-box domain 74 127 IPR036047 GO:0005515
Dere01g0872 456 FunFam Tubby-like F-box protein 141 456 - -
Dere01g0872 456 Pfam F-box domain 84 131 IPR001810 GO:0005515
Dere01g0872 456 ProSitePatterns Tub family signature 2. 441 456 IPR018066 -
Dere01g0872 456 FunFam Tubby-like F-box protein 79 132 - -
Dere01g0872 456 CDD F-box_AtTLP-like 84 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g0872 Dere-ChrDere01 17657766 17662089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g0872 32 456 TUB Transcription Factor Family AT1G76900 70.153 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere01g0872 Tub 1.5e-116 CL0395